View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_high_12 (Length: 397)
Name: NF18684_high_12
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 35207246 - 35207618
Alignment:
| Q |
9 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
108 |
Q |
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|||||||||| ||| ||||| ||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35207246 |
gacatcatcagaatcggcggcagatcaaaaaatcttagaaaggatggagaatctttcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
35207345 |
T |
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| Q |
109 |
tcttcaggcaattcttcaaaacgtgtcattttttggttctttaccggtgacatttagcatacacaaatgatagatatcacaaatcgccgctcactaatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35207346 |
tcttcaggcaattcttcaaaacgtgtcattttttggttctttaccggtgacatttagcatacacaaatgatagatatcacaaatcgccgctcactaatgt |
35207445 |
T |
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| Q |
209 |
tattacaccattggttttaaccttaaatatgaagactcaacaattatttttctttcatttaccccaattatattttctataatttaaattctagtctacc |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35207446 |
tattacaccattggttttaactttaaatatgaagactcaacaattatttttctttcatttaccccaattatattttctataatttaaattctagtctacc |
35207545 |
T |
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| Q |
309 |
aagtgcatgtatggcatcacatagactttgcttttattttaaacgatccaataaaacaatggagagaaaaaat |
381 |
Q |
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| T |
35207546 |
aagtgcatgtatggcatcacatagactttgcttttatcttaaacgatccaataaaacaatggagagaaaaaat |
35207618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 35214452 - 35214586
Alignment:
| Q |
9 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
108 |
Q |
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| T |
35214452 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagaaaggacggagaatctaccaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
35214551 |
T |
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| Q |
109 |
tcttcaggcaattcttcaaaacgtgtcattttttg |
143 |
Q |
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| T |
35214552 |
ccttcaggcaattcatcaaaccttgtcattctttg |
35214586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 35146096 - 35145975
Alignment:
| Q |
9 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
108 |
Q |
| |
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|||||||||| ||| ||||| ||||||||||||||||||| || |||||||| ||| || |||||||||||||||||| |||||||| | |||||| |
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| T |
35146096 |
gacatcatcagaatcggcggcagatcgaaaagtcttagaatggacggagaatccaccaatgtcaatcggagtcgtgcgagagtgtatggtggcgatacac |
35145997 |
T |
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| Q |
109 |
tcttcaggcaattcttcaaaac |
130 |
Q |
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|||||| |||||||||||||| |
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| T |
35145996 |
ccttcagacaattcttcaaaac |
35145975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 35145845 - 35145965
Alignment:
| Q |
10 |
acatcatcaaaattggcggaagatcgaaaa-gtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
108 |
Q |
| |
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||||||||| ||| ||||| |||||||||| |||||||||| || | |||||||| |||| || ||| || ||||| |||||||||||| | |||||||| |
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| T |
35145845 |
acatcatcagaatcggcggcagatcgaaaaagtcttagaaaggacgaagaatctgccaacgtcaatcagattcgtgggagagagtatggcggcaatacac |
35145944 |
T |
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| Q |
109 |
tcttcaggcaattcttcaaaa |
129 |
Q |
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|||||||||||||||||||| |
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| T |
35145945 |
ccttcaggcaattcttcaaaa |
35145965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 35215580 - 35215613
Alignment:
| Q |
288 |
taatttaaattctagtctaccaagtgcatgtatg |
321 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
35215580 |
taatttaatttctagtctaccaagtgcatgtatg |
35215613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 35249985 - 35250038
Alignment:
| Q |
76 |
ggagtcgtgcgagagagtatggtgacaatacactcttcaggcaattcttcaaaa |
129 |
Q |
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|||||||| ||||||||||||| | |||| |||||||| |||||||| |||||| |
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| T |
35249985 |
ggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaaa |
35250038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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