View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_high_13 (Length: 390)
Name: NF18684_high_13
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_13 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 19380781 - 19381152
Alignment:
| Q |
16 |
atatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19380781 |
atatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaa |
19380880 |
T |
|
| Q |
116 |
caaattacagggaccaattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaact |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19380881 |
caaattacagggactaattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaact |
19380980 |
T |
|
| Q |
216 |
ctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19380981 |
ctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactctctagtttagatt |
19381080 |
T |
|
| Q |
316 |
cgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19381081 |
cgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcaactctctc |
19381152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 387
Target Start/End: Original strand, 19399624 - 19399967
Alignment:
| Q |
44 |
caatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaa |
143 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
19399624 |
caatatatatggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctcgttgataacaaactacagggaccaattcaagatgaa |
19399723 |
T |
|
| Q |
144 |
ataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgt |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||| ||| | |
|
|
| T |
19399724 |
ataggtcaactagcacatattgaatatcttggtcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattact |
19399823 |
T |
|
| Q |
244 |
tatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
19399824 |
tatctattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttct |
19399923 |
T |
|
| Q |
344 |
attccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
19399924 |
attccagtttgatttagattgggttcctccttttcaactctctc |
19399967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 18146718 - 18147081
Alignment:
| Q |
16 |
atatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaa |
115 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| | || ||| |
|
|
| T |
18146718 |
atatcaactatcttagccttgaggagagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctctataataa |
18146817 |
T |
|
| Q |
116 |
caaattacagggaccaattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaact |
215 |
Q |
| |
|
|||| |||| ||| |||||||| ||| |||||||||||| ||||||||| |||| || |||||| | |||||||||||||||||||||| || | |||| |
|
|
| T |
18146818 |
caaactacacggatcaattccaaatggaataggccaacttgcacatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaact |
18146917 |
T |
|
| Q |
216 |
ctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagatt |
315 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||| |
|
|
| T |
18146918 |
ctaggaaacctctcatccttaaattacttatggattggctctaataatttctctggtgcaatttcaaaattaactttttccaacctctctagtttagatt |
18147017 |
T |
|
| Q |
316 |
cgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
| |||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18147018 |
cactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttca |
18147081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 52 - 387
Target Start/End: Original strand, 25462974 - 25463309
Alignment:
| Q |
52 |
atggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaataggcca |
151 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
25462974 |
atggtgacataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctcataaccaattacagggaccaattccagatggaataggcca |
25463073 |
T |
|
| Q |
152 |
actagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctatt |
251 |
Q |
| |
|
|||| || ||||| |||| || |||||| | | |||||||||| |||||| || || |||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
25463074 |
actaccaaatattcaataccttgatctttccattaacatgttaattggtttaatccctttaactataggaaacctctcatccttaacttccttatctatc |
25463173 |
T |
|
| Q |
252 |
ggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaat |
351 |
Q |
| |
|
||||||||||| |||||||| | |||||| |||| |||||| |||||||||| |||||||||||| ||||||||||||||||||| |||| |||| |||| |
|
|
| T |
25463174 |
ggctctaataacttctctggggcaatttcaaaattaactttctccaaactctttagtttagattcactagacttgagtaattcaacttttgtattacaat |
25463273 |
T |
|
| Q |
352 |
ttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25463274 |
ttgatttggattgggttcctccttttcaactctctc |
25463309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 185 - 386
Target Start/End: Original strand, 19375679 - 19375880
Alignment:
| Q |
185 |
gaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaa |
284 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19375679 |
gaacatgttaagtggtttcattcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctggtgaaatttctaaa |
19375778 |
T |
|
| Q |
285 |
tcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctct |
384 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19375779 |
ttaactttttccaaactctctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttcaactct |
19375878 |
T |
|
| Q |
385 |
ct |
386 |
Q |
| |
|
|| |
|
|
| T |
19375879 |
ct |
19375880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 42 - 387
Target Start/End: Complemental strand, 14896476 - 14896131
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatg |
141 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||| ||| | || ||||||||| |||| ||||| |||| ||| ||||||||||| |
|
|
| T |
14896476 |
agcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaaacaacctacaaggatcaattccagata |
14896377 |
T |
|
| Q |
142 |
aaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatattt |
241 |
Q |
| |
|
|||||| |||||| || ||||| || | || |||||| | | |||||||||||| |||||||| || | ||||||||||||||||||||||||| || |
|
|
| T |
14896376 |
gaatagggcaactaccaaatattcaacaccttgatctttcaatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaatttc |
14896277 |
T |
|
| Q |
242 |
gttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttt |
341 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| || | |||||||||||||| ||||||||||| ||| |||||| |||||||||||||| || |
|
|
| T |
14896276 |
cttatccattggctctaataatttctctgctgaaatttcaaatttaactttttccaaacactctagtttagtttcactagacatgagtaattcaaatgtt |
14896177 |
T |
|
| Q |
342 |
ttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14896176 |
gcattccaatttgatttggattgggttcctccttttcaactctctc |
14896131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 45 - 386
Target Start/End: Original strand, 19351311 - 19351651
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||||||||||| ||| || ||||||||| |||| || |||| ||| |||||||||||| || |
|
|
| T |
19351311 |
aatatatatggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctcaaatataaccaactacaaggatcaattccagatggaa |
19351410 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|| |||||||| || ||||| |||| || |||||| | |||||||||||||||||||||| || | ||||||||||||||||||||||||| || || |
|
|
| T |
19351411 |
taagccaactaccaaatattcaataccttgatctttcatggaacatgttaagtggtttcattccttcaactctaggaaacctctcatccttaatttcctt |
19351510 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
|
|
| T |
19351511 |
atcgattggctctaatcatttcactggtgaaatttcacaatttt-tttttccaaactctctagtttagaatggctagacttgagtaattcaaattttgta |
19351609 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttcatctctct |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19351610 |
ttccaatttgatttggattgggttcctccttttcaactctct |
19351651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 379
Target Start/End: Original strand, 17949745 - 17950083
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaatta----cagggaccaattccagat |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||||||||| || ||| ||||| |||| |
|
|
| T |
17949745 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataacaaattaactacaaggatcaattatagat |
17949844 |
T |
|
| Q |
141 |
gaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatt |
240 |
Q |
| |
|
||| ||||||||| || || ||||||| || ||| || | ||||||||| ||||| |||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
17949845 |
agaattggccaactaccaaattttgaataccttgatatttccgcgaacatgtttggtggtctcattccttcaactctaggaaacctctcatccttatatt |
17949944 |
T |
|
| Q |
241 |
tgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || | | |||||||||| | | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
17949945 |
acttatctattggctctaataatttctctggtaaaatttcaaatttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaattt |
17950044 |
T |
|
| Q |
341 |
tttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
17950045 |
tgtaatccaatttgatttggattgggttcctccttttca |
17950083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 44 - 379
Target Start/End: Original strand, 18165072 - 18165407
Alignment:
| Q |
44 |
caatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaa |
143 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||| || |||| || ||| | | ||||| | ||| |||||||||||| | |
|
|
| T |
18165072 |
caatataaatggtgagataccttcaagcttgctaaaacttcaaaatttgcaataccttttgctagctaaaacccaattaaaaggatcaattccagatgga |
18165171 |
T |
|
| Q |
144 |
ataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgt |
243 |
Q |
| |
|
|||||||||||| | ||||| || || |||||| | ||||||||||||| ||||| || || | |||||||||||||||||||||||| || | |
|
|
| T |
18165172 |
ataggccaactaataaatattaaaggccttgatctttcagggaacatgttaagcggttttatcccttcgactctaggaaacctctcatccttaaatgact |
18165271 |
T |
|
| Q |
244 |
tatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | | |||| |||||||||| | ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
18165272 |
tatctattggctctaataatttctctggtgaaatttcaaatttacattttgccaaactctccaatttagattcactagacttgagtaattcaaattttgt |
18165371 |
T |
|
| Q |
344 |
attccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18165372 |
attccaatttgctttggattgggttcctccttttca |
18165407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 45 - 379
Target Start/End: Original strand, 16677136 - 16677470
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| |||||| || ||||||| | ||| ||| || |||| | ||||||||||||||| |
|
|
| T |
16677136 |
aatatacatggtgagataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaaccaactacaactatcaattccagatgaaa |
16677235 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||| ||||||||||||||| || | || |||||| | | ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||| || |
|
|
| T |
16677236 |
taggtcaactagcacatattcaagaccttgatctttccatgaacatgttaagtggtttcattccttcaactctaggaaacctctcatctttaaattcctt |
16677335 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||| || | |||||||||||||||||||||||||||| |||||| |||| | | || | || || |
|
|
| T |
16677336 |
atctattggcaataatgatttctctggtgaagtttcaaatttaactttttccaaactctctagtttagatatactagacctgagaagattaagtgttgta |
16677435 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16677436 |
ttccaatttgatttggattgggttcctccatttca |
16677470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 42 - 379
Target Start/End: Original strand, 17941868 - 17942205
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatg |
141 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| |||| ||| |||| || |||| |||| ||||||| ||| |
|
|
| T |
17941868 |
agcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctcttataaccaactacaaggactaattccaaatg |
17941967 |
T |
|
| Q |
142 |
aaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatattt |
241 |
Q |
| |
|
||||||||||||| || ||||| |||| || ||||| || ||| || || | || || |||||||||||||||||||| ||| ||| |
|
|
| T |
17941968 |
gaataggccaactaccaaatattcaatacctcgatctctctgaaaacgaactacaaggatcaattcccacgactctaggaaacctctcatcattaaattg |
17942067 |
T |
|
| Q |
242 |
gttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttt |
341 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| || | |||||||| |||||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
17942068 |
gttatttattggttctaataatttctctggtgaaatttcaaatttaacttttttcaaactctctagtttagactcactagacttgagtaattcaagtttt |
17942167 |
T |
|
| Q |
342 |
ttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942168 |
gtattccaatttgatttggattgggttcctccttttca |
17942205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 44 - 384
Target Start/End: Original strand, 19333925 - 19334265
Alignment:
| Q |
44 |
caatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaa |
143 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| || ||||||| ||| |
|
|
| T |
19333925 |
caatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcagttccagaagaa |
19334024 |
T |
|
| Q |
144 |
ataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgt |
243 |
Q |
| |
|
||||||||||| | |||||| || | || ||||| || ||| || || | || || | |||||||||||||||||| |||||| ||| | |
|
|
| T |
19334025 |
ataggccaactttcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacctctcttccttaaattact |
19334124 |
T |
|
| Q |
244 |
tatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttt |
343 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||| || ||||||| ||||| |||||||| || | |
|
|
| T |
19334125 |
tatttattggctctaataatttctctggtgaaatttcaaaattaactttttccaaactctatactttaggtttgctagacatgagttattcaaatattgt |
19334224 |
T |
|
| Q |
344 |
attccaatttgatttggattgggttcctccttttcatctct |
384 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
19334225 |
attccaatttgatttggattggattcctccttttcaactct |
19334265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 17727453 - 17727279
Alignment:
| Q |
212 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
311 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
17727453 |
aactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
17727354 |
T |
|
| Q |
312 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
386 |
Q |
| |
|
||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17727353 |
gattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttcaactctct |
17727279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 19028682 - 19028508
Alignment:
| Q |
212 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
311 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
19028682 |
aactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagttta |
19028583 |
T |
|
| Q |
312 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
386 |
Q |
| |
|
||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19028582 |
gattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttcaactctct |
19028508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 18108356 - 18108695
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||| || |||| ||| ||||| |||| || |
|
|
| T |
18108356 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcaaataaccaactacaaggatcaattatagatagaa |
18108455 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
| ||||||| || || || |||| || ||| | | ||||||||| |||||| |||| || | |||| ||||||||||||| |||||| | || |
|
|
| T |
18108456 |
tttcccaactaccaaattttcaataccttgatatatccgcgaacatgtttagtggtctcattccttcaactgtaggaaacctctcttccttaaagcactt |
18108555 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| || | | ||||||||| ||||||| |||| ||| |||||||||||||||||||||||| || |
|
|
| T |
18108556 |
atttattggctctaataatttctctggcgaaatttcaaatttacatttttccaatctctctactttattttcactagacttgagtaattcaaattttgta |
18108655 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttcatctct |
384 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
18108656 |
ttccagtttgatttggattgggttcctccttttcaactct |
18108695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 42 - 387
Target Start/End: Original strand, 19393063 - 19393408
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatg |
141 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||||||||| | |||| |||| | | || || |||| ||| |||||| ||||| |
|
|
| T |
19393063 |
agcaacatatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctctttgaaaatcaactacaaggatcaattcaagatg |
19393162 |
T |
|
| Q |
142 |
aaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatattt |
241 |
Q |
| |
|
|||||||||||| | |||| || |||| || ||| || | | |||||||| |||||||| || || | |||| |||||||||||||||||||| ||| |
|
|
| T |
19393163 |
gaataggccaacttgaacatcttcaataccttgatgtttcgaaaaacatgttgagtggttttattccttcaactttaggaaacctctcatccttaaatta |
19393262 |
T |
|
| Q |
242 |
gttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttt |
341 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||| || | | ||||||||||||| |||||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
19393263 |
cttatctattagcgataacaatttctctggtgaaatttcaaatttacatttttccaaactccatagtttagtttcactaaacttgagtaattcaattttt |
19393362 |
T |
|
| Q |
342 |
ttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
19393363 |
gaattccaatttgatttgaattgggttcctccttttcaactctctc |
19393408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 217 - 387
Target Start/End: Original strand, 19437047 - 19437217
Alignment:
| Q |
217 |
taggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattc |
316 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
19437047 |
taggaaacctctcatccttaagttacctatctattggttctaataatttctctggtgaaatttcaaaattaactttttccaaactctctagtttagattg |
19437146 |
T |
|
| Q |
317 |
gctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
||| |||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
19437147 |
gctcgacttgagcaattcaaattttgtattcaaatttgatatggattgggttcctccttttcaactctctc |
19437217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 143 - 379
Target Start/End: Original strand, 19424702 - 19424938
Alignment:
| Q |
143 |
aataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttg |
242 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | | || |||||||||||||| || || | |||| |||||||||||||||| ||| || |
|
|
| T |
19424702 |
aataggccaactagcacatattcaaagccttgatctttcaaacaatatgttaagtggtttaattccttcaactttaggaaacctctcatcattaaatcac |
19424801 |
T |
|
| Q |
243 |
ttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattttt |
342 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
19424802 |
ttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactctctagtttagaagaactagacttgagtaattcaacttttg |
19424901 |
T |
|
| Q |
343 |
tattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19424902 |
tattccaatttgatttggattgggttcctccttttca |
19424938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 386
Target Start/End: Original strand, 19414097 - 19414442
Alignment:
| Q |
41 |
tagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagat |
140 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||| || | |||| || |||| || || |||||||| |
|
|
| T |
19414097 |
tagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatcaaataaccaactacaagggtcagttccagat |
19414196 |
T |
|
| Q |
141 |
gaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatt |
240 |
Q |
| |
|
| ||||||| || ||||||||||| || | || ||||| || ||| || || ||||| | | |||||||||||| ||| |||||||| ||| |
|
|
| T |
19414197 |
ggaataggcaaattagcacatattcaacacctcgatctctctgaaaaccaactacaaggattcattctttcaactctaggaaatctcccatccttaaatt |
19414296 |
T |
|
| Q |
241 |
tgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattt |
340 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||| || | | |||||||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
19414297 |
acttatctattggttcgaataatttctctggtaatattttaaatttatatttttccaaactctctagtttaaatcatctagacttgagtaattcaagttt |
19414396 |
T |
|
| Q |
341 |
tttattccaatttgatttggattgggttcctccttttcatctctct |
386 |
Q |
| |
|
| | |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
19414397 |
tgttttccaatttgatttggattgggttcccccttttcaactctct |
19414442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 385
Target Start/End: Original strand, 18115882 - 18116222
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||| || |||| || |||| | | |||||||||| |||| |
|
|
| T |
18115882 |
aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcctataaccaactacaagaatcaattccagaagaaa |
18115981 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||||||||| || |||||| || | || ||||| || ||| || || | || || | |||||||||||| ||||| ||| || ||| || |
|
|
| T |
18115982 |
taggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaatctctcttccctaaattactt |
18116081 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || |
|
|
| T |
18116082 |
atctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagatcatctagacttgcgtaattcagattttgta |
18116181 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttcatctctc |
385 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18116182 |
atccagattgatttggattgggttcctccctttcaactctc |
18116222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 212 - 387
Target Start/End: Original strand, 18103430 - 18103605
Alignment:
| Q |
212 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||| || | |||||||||||||| ||||||| |
|
|
| T |
18103430 |
aactctaggaaacctctcatccttaaattacttatttattggctctaataatttctctggtaaaatttcaaatttgcatttttccaaactctgtagttta |
18103529 |
T |
|
| Q |
312 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
18103530 |
gatgaactagacttgagtaactcaaattttgtattccaatttgatatggattgggtacctccttttcaactctctc |
18103605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 379
Target Start/End: Original strand, 18016106 - 18016273
Alignment:
| Q |
212 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
311 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
18016106 |
aactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtgaaatttcacaattttttttttccaaactctctagttta |
18016205 |
T |
|
| Q |
312 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18016206 |
aatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca |
18016273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 216 - 387
Target Start/End: Original strand, 19464444 - 19464615
Alignment:
| Q |
216 |
ctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagatt |
315 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| |||||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
19464444 |
ctaggaaacctctcatctttaaatgacttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacatt |
19464543 |
T |
|
| Q |
316 |
cgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctctc |
387 |
Q |
| |
|
||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19464544 |
atttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctccttttcaactctctc |
19464615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 378
Target Start/End: Original strand, 18144284 - 18144440
Alignment:
| Q |
222 |
aacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctag |
321 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| |||||||||||||||||||| || | | ||||||||||||||||||||||| | ||| |
|
|
| T |
18144284 |
aacctctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacatttttccaaactctctagtttagttgtactat |
18144383 |
T |
|
| Q |
322 |
acttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttc |
378 |
Q |
| |
|
| |||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18144384 |
agatgaggaattcacgttttgtattccaatttgatttggattaggttcctccttttc |
18144440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 308
Target Start/End: Original strand, 19461449 - 19461712
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| | |||| |||| ||| |||| || |||| | | || ||||| | |||| |
|
|
| T |
19461449 |
aatatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctcttataaccaactacaagaatcagttccaaaagaaa |
19461548 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||||||||| || |||||| || | || ||||| || ||| || || | || || | |||||||||||||||||| ||| || ||| || |
|
|
| T |
19461549 |
taggccaacttgcccatattcaacaacttgatctctctgaaaaccaactacaaggatctattccttcaactctaggaaacctctcttccctaaattactt |
19461648 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||| |
|
|
| T |
19461649 |
atctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactctctagt |
19461712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 18103334 - 18103426
Alignment:
| Q |
44 |
caatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattcc |
136 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| ||||||| |
|
|
| T |
18103334 |
caatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattcc |
18103426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 19424530 - 19424639
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatg |
141 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||| | ||||||||| ||| ||| || || | ||| |||||||||||| |
|
|
| T |
19424530 |
agcaatatacatggtgggataccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaaccaactataaggatcaattccagatg |
19424629 |
T |
|
| Q |
142 |
aaataggcca |
151 |
Q |
| |
|
||||||||| |
|
|
| T |
19424630 |
gaataggcca |
19424639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 19375611 - 19375675
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttc |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
19375611 |
aatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatctttc |
19375675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 19436954 - 19437050
Alignment:
| Q |
52 |
atggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaatagg |
148 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||||||||||| || ||||||||| ||| |||| || |||| ||| |||||||||||| |||||| |
|
|
| T |
19436954 |
atggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctcttataaccaactacaaggatcaattccagatggaatagg |
19437050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 18016007 - 18016059
Alignment:
| Q |
41 |
tagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttga |
93 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
18016007 |
tagcaatatacatggtgagataccttctagcttgctaaaccttcaaaatttga |
18016059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 17727568 - 17727501
Alignment:
| Q |
97 |
tccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatatt |
164 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
17727568 |
tccttgatctctctcataaccaattacagggaccaattccatatgggataggccaacttgcacatatt |
17727501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 19028797 - 19028730
Alignment:
| Q |
97 |
tccttgatctttctagtaacaaattacagggaccaattccagatgaaataggccaactagcacatatt |
164 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
19028797 |
tccttgatctctctcataaccaattacagggaccaattccatatgggataggccaacttgcacatatt |
19028730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 17727767 - 17727718
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaattt |
91 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
17727767 |
agcaatatacatggtgagataccttctagcttggtaaaccttcaaaattt |
17727718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 18144146 - 18144255
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| || | || | ||||||||| | | |||| | ||||| ||| || ||||||| |||| |
|
|
| T |
18144146 |
aatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctctttcataaccagttacaaggatcagttccagaagaaa |
18144245 |
T |
|
| Q |
145 |
taggccaact |
154 |
Q |
| |
|
|||||||||| |
|
|
| T |
18144246 |
taggccaact |
18144255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 19028996 - 19028947
Alignment:
| Q |
42 |
agcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaattt |
91 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
19028996 |
agcaatatacatggtgagataccttctagcttggtaaaccttcaaaattt |
19028947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 24493373 - 24493421
Alignment:
| Q |
229 |
catccttatatttgttatctattggctctaataatttctctggtgaaat |
277 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24493373 |
catccttatcttacttatctattgcctctaataatttctcaggtgaaat |
24493421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 41 - 385
Target Start/End: Complemental strand, 2710663 - 2710319
Alignment:
| Q |
41 |
tagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagat |
140 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||| |||| |||| |||||||| || ||| ||||||||| |||| || |||| |||||||||| |||| |
|
|
| T |
2710663 |
tagcaatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagacaactttatctttctaataaccaactacaaggaccaattcaagat |
2710564 |
T |
|
| Q |
141 |
gaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatt |
240 |
Q |
| |
|
|||||||||||||||||| ||||| |||| || |||||| | | |||||||||||| |||||||| || | ||||||||||||||||||||||||| | | |
|
|
| T |
2710563 |
gaaataggccaactagcatatattcaataccttgatctttccatgaacatgttaagcggtttcattccttcaactctaggaaacctctcatccttaaagt |
2710464 |
T |
|
| Q |
241 |
tgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaattt |
340 |
Q |
| |
|
||| ||||||| ||||| |||| |||||||||||||| || | |||||||||||||||||||||||||||||| |||||| |||||| ||||| || |
|
|
| T |
2710463 |
ccttacttattggcactaatcatttttctggtgaaatttcaaatttaactttttccaaactctctagtttagattcactagacgtgagtagttcaacttg |
2710364 |
T |
|
| Q |
341 |
tttattccaatttgatttggattgggttcctccttttcatctctc |
385 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2710363 |
tgtattccaatttgatttgaattgggttcctccttttcaactctc |
2710319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 142 - 379
Target Start/End: Original strand, 15535547 - 15535784
Alignment:
| Q |
142 |
aaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatattt |
241 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
15535547 |
aaataggccaactagcacatattcaatatcttgatctttctaggaacatgttaagttctttcattccttcaactctaggaaacctctcatccttaaattc |
15535646 |
T |
|
| Q |
242 |
gttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttt |
341 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| || ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15535647 |
cttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactctctggtttagattcactagacttgagtaattcaaatttt |
15535746 |
T |
|
| Q |
342 |
ttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15535747 |
gtattccaattttatttggattgggttcctccttttca |
15535784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 15532279 - 15532369
Alignment:
| Q |
56 |
tgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaata |
146 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||| | |||||||||| |||| |||| || |||| ||| ||||||||||| ||||| |
|
|
| T |
15532279 |
tgagataccttcaagtttgctaaatcttcaaaatttgagaatccttgatctctctaataaccaactacaaggatcaattccagataaaata |
15532369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 378
Target Start/End: Complemental strand, 4186 - 3853
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| || |
|
|
| T |
4186 |
aatatatatggtgagatacctcgtagcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
4087 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||| ||||||||| ||||| || | || |||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||| ||| || |
|
|
| T |
4086 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
3987 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || || |
|
|
| T |
3986 |
atctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgta |
3887 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttc |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
3886 |
ttccgatttgatttggattgggttcctccttttc |
3853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 378
Target Start/End: Complemental strand, 3656 - 3323
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| || |
|
|
| T |
3656 |
aatatatatggtgagatacctcgtagcttgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
3557 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||| ||||||||| ||||| || | || |||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||| ||| || |
|
|
| T |
3556 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
3457 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || || |
|
|
| T |
3456 |
atctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgta |
3357 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttc |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
3356 |
ttccgatttgatttggattgggttcctccttttc |
3323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 378
Target Start/End: Original strand, 5320 - 5653
Alignment:
| Q |
45 |
aatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaa |
144 |
Q |
| |
|
||||||||||| ||||| ||||| ||| ||||||||||||||||||||| || |||||||| ||| ||| || |||| ||| || || || ||| || |
|
|
| T |
5320 |
aatatatatggcgagataccttctagcatgctaaaccttcaaaatttgagacatcttgatctctctgaaaaccaactacaaggatcagtttcacatggaa |
5419 |
T |
|
| Q |
145 |
taggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctcatccttatatttgtt |
244 |
Q |
| |
|
|||| ||||||||| ||||| || | || |||||| | | ||||||||| |||||||||| || |||||||||||||||||||||||||| ||| || |
|
|
| T |
5420 |
taggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaggtggtttcattcctgtaactctaggaaacctctcatccttacattcctt |
5519 |
T |
|
| Q |
245 |
atctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagtaattcaaatttttta |
344 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||| || || |
|
|
| T |
5520 |
atctactggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaactatacttgagtaattcaaatattgta |
5619 |
T |
|
| Q |
345 |
ttccaatttgatttggattgggttcctccttttc |
378 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| |
|
|
| T |
5620 |
tttcgatttgatttggattgggttcctccttttc |
5653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 13666866 - 13666692
Alignment:
| Q |
212 |
aactctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagttta |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
13666866 |
aactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctggtgaaatttcaaatttaactttttctaaactctctagttta |
13666767 |
T |
|
| Q |
312 |
gattcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttcatctctct |
386 |
Q |
| |
|
|| | ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
13666766 |
gacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcctcctttttaactctct |
13666692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 130 - 379
Target Start/End: Original strand, 8459550 - 8459799
Alignment:
| Q |
130 |
caattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccattaactctaggaaacctctc |
229 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||| || |||||| | | |||||||||||||||||||| || | ||||| ||||||||||| |
|
|
| T |
8459550 |
caattccgtatggaataggccaactagcacatattcaataccttgatctttccaaaaacatgttaagtggtttcattccttctactcttggaaacctctc |
8459649 |
T |
|
| Q |
230 |
atccttatatttgttatctattggctctaataatttctctggtgaaatttctaaatcaactttttccaaactctctagtttagattcgctagacttgagt |
329 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||| |||||||||| || ||| ||||||||||||| |||| ||| || |||||||| ||| |
|
|
| T |
8459650 |
atccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactctatagtctaggttttctagacttaagt |
8459749 |
T |
|
| Q |
330 |
aattcaaattttttattccaatttgatttggattgggttcctccttttca |
379 |
Q |
| |
|
| || |||| || |||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
8459750 |
agtttaaatattgtatttcaattcgatttggattgggttcctccatttca |
8459799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 8459394 - 8459527
Alignment:
| Q |
46 |
atatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatctttctagtaacaaattacagggaccaattccagatgaaat |
145 |
Q |
| |
|
|||||||||| |||||||||||||||||| || |||||| |||||||| || ||||||||| ||| |||| || |||| ||| |||||||| ||| ||| |
|
|
| T |
8459394 |
atatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctctcttataaccaactacaaggatcaattccaaatggaat |
8459493 |
T |
|
| Q |
146 |
aggccaactagcacatattgaatatctggatctt |
179 |
Q |
| |
|
||||||||| ||||||| |||| || |||||| |
|
|
| T |
8459494 |
ccgccaactagaacatattaaataccttgatctt |
8459527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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