View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18684_high_18 (Length: 362)

Name: NF18684_high_18
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18684_high_18
NF18684_high_18
[»] chr3 (20 HSPs)
chr3 (1-174)||(28183455-28183628)
chr3 (1-174)||(28147250-28147427)
chr3 (16-166)||(17746578-17746731)
chr3 (16-166)||(19047898-19048051)
chr3 (248-345)||(28049533-28049630)
chr3 (16-167)||(27918067-27918221)
chr3 (248-345)||(28145331-28145428)
chr3 (1-167)||(28081438-28081607)
chr3 (18-174)||(28482246-28482405)
chr3 (275-345)||(28158037-28158107)
chr3 (1-143)||(28131666-28131811)
chr3 (18-174)||(28511058-28511217)
chr3 (110-174)||(27974235-27974299)
chr3 (239-300)||(27462616-27462677)
chr3 (1-61)||(28053300-28053360)
chr3 (1-61)||(28063725-28063785)
chr3 (265-306)||(26627110-26627151)
chr3 (89-142)||(28001961-28002014)
chr3 (110-147)||(28053220-28053257)
chr3 (110-147)||(28063645-28063682)
[»] scaffold0257 (1 HSPs)
scaffold0257 (18-174)||(17037-17196)
[»] chr2 (1 HSPs)
chr2 (111-172)||(8019591-8019652)
[»] chr7 (1 HSPs)
chr7 (1-62)||(8693729-8693790)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28183628 - 28183455
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttatctaccttaagtcttc 100  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||||| ||  | || |||||||  |||||||||||||| ||||||||  || |||     
T  28183628 tccaaatcaatgtcttccaaagctaagttcatttgccgttcatttatttcatcgacacgaaagatactttctacattggagtgatctacctcgagacttt 28183529  T
Q  101 ccaaagcacgaaaatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcataaa 174  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  28183528 ccaaagcacaaaaatgttcgacattcccactcaattcctgcaataaatgaatgggaaataaacacatgcataaa 28183455  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28147427 - 28147250
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttat---ctaccttaagtc 97  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||    |||| | ||||    
T  28147427 tccaaatcaatgtcttccaaagctaagttcatttgctgttcatttatttcattcagacaaaagatactttctactttggagttattcgttaccatgagtc 28147328  T
Q  98 ttcccaaagcacgaaaatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacac-atgcataaa 174  Q
    |  |||||||  ||||||  ||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||    
T  28147327 tctccaaagcgagaaaattatccacattcccactcaattcctgtaataaatgaatgggaaataaacacaatgcataaa 28147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 17746578 - 17746731
Alignment:
Q  16 tccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttatc---taccttaagtcttcccaaagcacgaa 112  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||| |||  |||||| || ||||| |    ||| || ||| || ||||||||||||    
T  17746578 tccaaagctaagttcatttgctgttcatttctttcattgagacaaaatatactttctactttagagtttttgtttacattgagtgtttccaaagcacgaa 17746677  T
Q  113 aatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacaca 166  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||||||||||||    
T  17746678 aatgttccacatccccactcaattcctgcaataaatgaatgagaaataaacaca 17746731  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 19047898 - 19048051
Alignment:
Q  16 tccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttatc---taccttaagtcttcccaaagcacgaa 112  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||| |||  |||||| || ||||| |    ||| || ||| || ||||||||||||    
T  19047898 tccaaagctaagttcatttgctgttcatttctttcattgagacaaaatatactttctactttagagtttttgtttacattgagtgtttccaaagcacgaa 19047997  T
Q  113 aatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacaca 166  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||||||||||||    
T  19047998 aatgttccacatccccactcaattcctgcaataaatgaatgagaaataaacaca 19048051  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 28049630 - 28049533
Alignment:
Q  248 ttagattcacaaaaaacaagatatata-aaaatagggataccttgatgattgtaccgtccccgcagttattgagttcaagatgtttcaaaggtggaaat 345  Q
    ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  28049630 ttagattcacaaataacaa-agatatacaaaatagggataccttgatgattttaccgtccccgcagttattgagttcaagttctttcaaaggtggaaat 28049533  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 27918221 - 27918067
Alignment:
Q  16 tccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttatc---taccttaagtcttcccaaagcacgaa 112  Q
    |||||| |||| |||||||| ||||||||||||| ||| |||||||||||   |||||| ||||||||||    ||||   |||||||||||||| | ||    
T  27918221 tccaaacctaatttcatttgttgttcatttatttcattgagacaaaagatgctttctactttggagttattatttaccacgagtcttcccaaagcgctaa 27918122  T
Q  113 aatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacat 167  Q
    |||| || |||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  27918121 aatgctcgacattcccactcaaatcctgtaataaacgaatgggaaataaacacat 27918067  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 28145428 - 28145331
Alignment:
Q  248 ttagattcacaaaaaacaagatatata-aaaatagggataccttgatgattgtaccgtccccgcagttattgagttcaagatgtttcaaaggtggaaat 345  Q
    ||||||||||||| ||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  28145428 ttagattcacaaataacaa-agatatacaaaatagagataccttgatgattttaccgtccccgcagttattgagttcaagttctttcaaaggtggaaat 28145331  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 28081607 - 28081438
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagttatc---taccttaagtc 97  Q
    ||||||||||| || | ||||||||||||||||| |||||||||||||| ||| ||||||| ||||  |||||| | ||||||||    |||   ||||     
T  28081607 tccaaatcaatgactttcaaagctaagttcattttctgttcatttatttcattgagacaaacgatactttctacttcggagttattatatacaacaagtt 28081508  T
Q  98 ttcccaaagcacgaaaatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacat 167  Q
    |    |||||  ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  28081507 tctttaaagcgagaaaatgatccacattcccactcaattcctgcaataaatgaatgggaaataaacacat 28081438  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 28482246 - 28482405
Alignment:
Q  18 caaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggag---ttatctaccttaagtcttcccaaagcacgaaaa 114  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||| ||||||||| ||||||   |||| |||| | ||| |  |||||||  |||||    
T  28482246 caaagctaagctcagttgttgttcatttatttcattcagacaaaagacatcttctactttggagttattatttaccatgagtgtctccaaagctagaaaa 28482345  T
Q  115 tgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcataaa 174  Q
    |  |||| |||||||||  |||||| |||||||  ||||||||||||||||||| |||||    
T  28482346 ttatccatattcccacttgattcctacaataaatgaatgggaaataaacacatgtataaa 28482405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 28158107 - 28158037
Alignment:
Q  275 aaaatagggataccttgatgattgtaccgtccccgcagttattgagttcaagatgtttcaaaggtggaaat 345  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||| ||||||||    
T  28158107 aaaatagggataccttgatgattttaccgtccccgcagttattgagttcaagtttttccaaatgtggaaat 28158037  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28131811 - 28131666
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagtta---tctaccttaagtc 97  Q
    |||||||||||  | | |||||||||||||||||||||||||||||||| ||| | ||||| ||||  |||||| |||||||||   | |||  | ||||    
T  28131811 tccaaatcaatgtctttcaaagctaagttcatttgctgttcatttatttcatttatacaaatgatactttctactttggagttattctttactatgagtc 28131712  T
Q  98 ttcccaaagcacgaaaatgttccacattcccactcaattcctgcaa 143  Q
    |  ||||||   ||||||| ||||||||||||||||||||||||||    
T  28131711 tctccaaagagagaaaatggtccacattcccactcaattcctgcaa 28131666  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 28511058 - 28511217
Alignment:
Q  18 caaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggag---ttatctaccttaagtcttcccaaagcacgaaaa 114  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||| ||||| ||| ||||||   |||| ||||   ||| |  |||||||  |||||    
T  28511058 caaagctaagctcagttgttgttcatttatttcattcagacaaaagacatcttttactttggagttattatttaccaagagtgtctccaaagctagaaaa 28511157  T
Q  115 tgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcataaa 174  Q
    |  |||| |||||||||  |||||| |||||||  ||||||||||||||||||| |||||    
T  28511158 ttatccatattcccacttgattcctacaataaatgaatgggaaataaacacatgtataaa 28511217  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 27974299 - 27974235
Alignment:
Q  110 gaaaatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcataaa 174  Q
    ||||||| |||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||    
T  27974299 gaaaatgatccacattcccactcaattcctacagtaaacgaatgagaaataaacacatgcataaa 27974235  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 27462616 - 27462677
Alignment:
Q  239 aatcattgattagattcacaaaaaacaagatatataaaaatagggataccttgatgattgta 300  Q
    ||||| ||| || ||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  27462616 aatcactgaatatatttacaaacaacaagatatatagaaatagggataccttgatgattgta 27462677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28053360 - 28053300
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaa 61  Q
    ||||||||||| || | |||||||||||||||||| |||||||||| || |||||||||||    
T  28053360 tccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa 28053300  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28063785 - 28063725
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaa 61  Q
    ||||||||||| || | |||||||||||||||||| |||||||||| || |||||||||||    
T  28063785 tccaaatcaatgactttcaaagctaagttcatttgatgttcatttaattcattcagacaaa 28063725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 26627151 - 26627110
Alignment:
Q  265 aagatatataaaaatagggataccttgatgattgtaccgtcc 306  Q
    ||||||||| |||| ||||||||||| |||||||||||||||    
T  26627151 aagatatatgaaaagagggatacctttatgattgtaccgtcc 26627110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 28002014 - 28001961
Alignment:
Q  89 ccttaagtcttcccaaagcacgaaaatgttccacattcccactcaattcctgca 142  Q
    ||||||| ||| | ||||| |||||||||||||||||||||| | |||||||||    
T  28002014 ccttaagactttctaaagcgcgaaaatgttccacattcccacccgattcctgca 28001961  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 28053257 - 28053220
Alignment:
Q  110 gaaaatgttccacattcccactcaattcctgcaataaa 147  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  28053257 gaaaatgatccacaatcccactcaattcctgcaataaa 28053220  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 28063682 - 28063645
Alignment:
Q  110 gaaaatgttccacattcccactcaattcctgcaataaa 147  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  28063682 gaaaatgatccacaatcccactcaattcctgcaataaa 28063645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 17196 - 17037
Alignment:
Q  18 caaagctaagttcatttgctgttcatttattttattcagacaaaagatatcttctacattggagtta---tctaccttaagtcttcccaaagcacgaaaa 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||||   | |||  | |||||  |||||||  |||||    
T  17196 caaagctaagttcatttgctgttcatttatttcattcagacaaaagatactttctactttggagttattctttacaatgagtctctccaaagcgagaaaa 17097  T
Q  115 tgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcataaa 174  Q
    |  |||| |||||||||  ||| ||||||||||  ||||||||||||||||||| |||||    
T  17096 ttatccatattcccactagattgctgcaataaatgaatgggaaataaacacatgtataaa 17037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 8019652 - 8019591
Alignment:
Q  111 aaaatgttccacattcccactcaattcctgcaataaaccaatgggaaataaacacatgcata 172  Q
    |||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||    
T  8019652 aaaatgttccacattcctcctcaattcctgcaataaataaatgggaaataaacacatgcata 8019591  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8693729 - 8693790
Alignment:
Q  1 tccaaatcaataacgtccaaagctaagttcatttgctgttcatttattttattcagacaaaa 62  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||| | ||||||    
T  8693729 tccaaatcaataaactccaaagctaagttcatttgctgttcatttatttcattgatacaaaa 8693790  T

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