View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_high_24 (Length: 310)
Name: NF18684_high_24
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 2304771 - 2305051
Alignment:
| Q |
20 |
aatattaaacgagatccttccaaataaaaattattgaactttttcatccaaagaaaataaaactattgaactttcaaaacctaaacacatgagaagtttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2304771 |
aatattaaacgagatccttccaaataaaaattattgaactttttcatccaaagaaaataaaactattgaactttctaaacctaaacacatgagaagtttt |
2304870 |
T |
|
| Q |
120 |
agggtctatgaaactcaacatagaggaattaat-attagcatttcttgtaatataggttagtttgtgattacttgactttgctttttgaggaaaagaaga |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2304871 |
agggtctatgaatctcaacatagaggaattaataattagcatttcttgtaatataggttagtttgtgattacttgactttgctttttgaggaaaagaaga |
2304970 |
T |
|
| Q |
219 |
agaatgagtatagtagatgtatgtaatttttgtcttcattgctacgactttgtgtagttaacaacctaactcgatcatatt |
299 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
2304971 |
agaatcagtatagtagatgtatgtaattattgccttcaatgccacgactttgtgtagttaacgatctaactcgatcatatt |
2305051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University