View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18684_high_26 (Length: 289)

Name: NF18684_high_26
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18684_high_26
NF18684_high_26
[»] chr7 (19 HSPs)
chr7 (10-226)||(31293021-31293235)
chr7 (10-224)||(49141940-49142154)
chr7 (11-226)||(20372436-20372652)
chr7 (10-226)||(30586059-30586272)
chr7 (22-220)||(41743126-41743321)
chr7 (11-223)||(47266248-47266460)
chr7 (134-226)||(32031359-32031451)
chr7 (83-212)||(31577403-31577531)
chr7 (83-188)||(44079874-44079979)
chr7 (147-226)||(27620193-27620272)
chr7 (83-222)||(22916745-22916884)
chr7 (224-273)||(25751803-25751852)
chr7 (10-65)||(27620062-27620117)
chr7 (18-65)||(44079994-44080041)
chr7 (83-225)||(8048234-8048368)
chr7 (13-65)||(22916677-22916729)
chr7 (22-65)||(43174980-43175023)
chr7 (23-61)||(31577559-31577597)
chr7 (137-205)||(2659723-2659790)
[»] chr5 (12 HSPs)
chr5 (12-226)||(25897917-25898130)
chr5 (12-224)||(22213266-22213476)
chr5 (10-220)||(30493875-30494084)
chr5 (10-220)||(30534218-30534427)
chr5 (83-225)||(36275534-36275676)
chr5 (10-227)||(26674054-26674267)
chr5 (10-227)||(26945659-26945873)
chr5 (11-224)||(42394025-42394242)
chr5 (83-225)||(11740533-11740675)
chr5 (11-224)||(13946373-13946579)
chr5 (83-176)||(28611667-28611761)
chr5 (24-65)||(36275693-36275734)
[»] chr3 (25 HSPs)
chr3 (12-226)||(8082342-8082554)
chr3 (12-224)||(41957976-41958187)
chr3 (11-220)||(11685741-11685948)
chr3 (18-225)||(30801009-30801214)
chr3 (83-225)||(18996572-18996714)
chr3 (83-225)||(18999111-18999253)
chr3 (12-226)||(45572655-45572867)
chr3 (83-225)||(13696734-13696876)
chr3 (10-224)||(24373069-24373280)
chr3 (83-225)||(37609163-37609305)
chr3 (83-225)||(28246933-28247075)
chr3 (83-226)||(30260651-30260794)
chr3 (83-218)||(53151606-53151739)
chr3 (11-185)||(3777296-3777468)
chr3 (83-221)||(20307322-20307460)
chr3 (11-65)||(13696656-13696710)
chr3 (83-203)||(54162910-54163030)
chr3 (11-65)||(53151532-53151586)
chr3 (83-126)||(30260816-30260859)
chr3 (11-65)||(18996729-18996783)
chr3 (11-65)||(18999268-18999322)
chr3 (11-65)||(28246863-28246917)
chr3 (11-48)||(20307469-20307506)
chr3 (137-188)||(48332116-48332167)
chr3 (11-65)||(37609092-37609146)
[»] chr2 (5 HSPs)
chr2 (11-225)||(30518448-30518662)
chr2 (12-225)||(15805752-15805962)
chr2 (11-224)||(27641022-27641236)
chr2 (11-225)||(32597352-32597566)
chr2 (11-225)||(5614534-5614746)
[»] chr8 (15 HSPs)
chr8 (10-225)||(2734848-2735062)
chr8 (11-226)||(38526482-38526693)
chr8 (10-225)||(38567512-38567725)
chr8 (10-226)||(35563728-35563941)
chr8 (11-225)||(1197547-1197762)
chr8 (83-226)||(9686363-9686506)
chr8 (11-225)||(18916140-18916355)
chr8 (11-223)||(41486470-41486680)
chr8 (83-225)||(11661335-11661477)
chr8 (9-223)||(24697547-24697758)
chr8 (141-226)||(1996315-1996400)
chr8 (148-218)||(43596095-43596165)
chr8 (83-126)||(43596192-43596235)
chr8 (11-65)||(2001464-2001518)
chr8 (11-65)||(43596253-43596307)
[»] chr6 (4 HSPs)
chr6 (11-225)||(4653574-4653785)
chr6 (10-226)||(33756394-33756604)
chr6 (134-221)||(24765199-24765286)
chr6 (11-65)||(24765359-24765413)
[»] chr4 (17 HSPs)
chr4 (83-221)||(2623312-2623450)
chr4 (10-225)||(24072388-24072602)
chr4 (12-225)||(9033957-9034169)
chr4 (11-225)||(26695824-26696037)
chr4 (11-225)||(39502589-39502802)
chr4 (12-225)||(39499250-39499462)
chr4 (11-225)||(29051954-29052169)
chr4 (11-225)||(56080598-56080809)
chr4 (11-222)||(40591057-40591265)
chr4 (12-223)||(44506118-44506326)
chr4 (10-219)||(127937-128142)
chr4 (83-224)||(37995451-37995592)
chr4 (83-224)||(45620395-45620535)
chr4 (137-221)||(51790234-51790318)
chr4 (11-225)||(31335050-31335267)
chr4 (11-65)||(37995607-37995661)
chr4 (153-223)||(54230730-54230800)
[»] chr1 (18 HSPs)
chr1 (12-226)||(45360170-45360382)
chr1 (83-226)||(32550411-32550554)
chr1 (10-224)||(14236398-14236604)
chr1 (13-220)||(43069011-43069215)
chr1 (11-223)||(5555196-5555405)
chr1 (11-226)||(19565163-19565377)
chr1 (11-205)||(40125432-40125624)
chr1 (11-204)||(21620060-21620252)
chr1 (83-223)||(4643587-4643727)
chr1 (10-223)||(3656524-3656728)
chr1 (83-222)||(6694058-6694200)
chr1 (135-218)||(3027730-3027813)
chr1 (10-54)||(4643754-4643798)
chr1 (134-206)||(25304381-25304453)
chr1 (158-219)||(16296884-16296945)
chr1 (24-65)||(32550356-32550397)
chr1 (91-126)||(2782456-2782491)
chr1 (83-126)||(35371891-35371934)
[»] scaffold0051 (1 HSPs)
scaffold0051 (10-225)||(59015-59230)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 31293235 - 31293021
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||||| |||||||||    
T  31293235 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttttaaaaaaaaattg--taacttccaattttttcgggaatgtca 31293138  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31293137 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttccca 31293038  T
Q  210 aaaacaaacgccccctt 226  Q
    |||||||||||||||||    
T  31293037 aaaacaaacgccccctt 31293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 49141940 - 49142154
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||                 |||||||||||||||||||||||||||    
T  49141940 attattctcatgtaaagagatgggaatgtatattcccatgatattatgcatagatttaaaaaaaaaaaaaatgtaacttccaattttttcaggaatgtca 49142039  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  49142040 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataattagtgtttccca 49142139  T
Q  210 aaaacaaacgccccc 224  Q
    |||||||||||||||    
T  49142140 aaaacaaacgccccc 49142154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 20372436 - 20372652
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnt-taacttccaattttttcaggaatgtca 109  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | ||||||||||||||| |||||||||||    
T  20372436 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 20372535  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20372536 agttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttccca 20372635  T
Q  210 aaaacaaacgccccctt 226  Q
    |||||||||||||||||    
T  20372636 aaaacaaacgccccctt 20372652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 30586272 - 30586059
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||                 |||||||||||||||||||||||||||    
T  30586272 attattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaattttttcaggaatgtca 30586176  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  30586175 agttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctggaaataatttgtgtttccca 30586076  T
Q  210 aaaacaaacgccccctt 226  Q
    |||||||||||||||||    
T  30586075 aaaacaaacgccccctt 30586059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 41743321 - 41743126
Alignment:
Q  22 taaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaagttatttgcca 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||    
T  41743321 taaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaattttttcaggaatgtcaagttatttgcca 41743225  T
Q  122 aacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgc 220  Q
    |||||       |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41743224 aacactttttttaacaaatatccaagaatcaaattttcatattttcatttccgggtatgttattcctggaaataatttgtgtttcccaaaaacaaacgc 41743126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 47266460 - 47266248
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaatttttt--caggaatgtc 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||||  ||||||||||    
T  47266460 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattg--taacttccaatttttttccaggaatgtc 47266363  T
Q  109 aagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccc 208  Q
    ||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  47266362 aagttattttccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgtttccc 47266263  T
Q  209 aaaaacaaacgcccc 223  Q
    |||||||||| ||||    
T  47266262 aaaaacaaacccccc 47266248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 32031451 - 32031359
Alignment:
Q  134 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32031451 aacaaatatccaagaatcaaattttcatattttcattcccagatatgttattcctaagaataatttgtgtttcccaaaaacaaacgccccctt 32031359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 31577531 - 31577403
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||       ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  31577531 taacttccaatatttccaggaatgtcaagttatttgctaaacactttttttaacaaatacccaagaatcaaatttttatattttcatttccgagtatgtt 31577432  T
Q  183 attcctaggaataatttgtgtttcccaaaa 212  Q
    |||||| |  |||||||||||| |||||||    
T  31577431 attcct-gagataatttgtgttccccaaaa 31577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 44079979 - 44079874
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||| ||| |||||||||||| |||||||       |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  44079979 taacttccaatttttccagtaatatcaagttatttgtcaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgtt 44079880  T
Q  183 attcct 188  Q
    ||||||    
T  44079879 attcct 44079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 27620193 - 27620272
Alignment:
Q  147 gaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    |||||||||||||||||||||||| || | |||| |||||||  |||||||||||||||||| |||||||||||||||||    
T  27620193 gaatcaaattttcatattttcatttccagatatgctattcctgtgaataatttgtgtttccctaaaacaaacgccccctt 27620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 22916745 - 22916884
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||| |||||||| || |||||||||||||||||| |||||        ||||||||| || |||||||| |||||||||||||| ||| | ||| ||    
T  22916745 taactttcaatttttccaagaatgtcaagttatttgctaaacattttttttaacaaatactcaggaatcaaaatttcatattttcatccccagatatatt 22916844  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccc 222  Q
    ||||| | ||||||||||||||| || ||||||| |||||    
T  22916845 attccaatgaataatttgtgttttcccaaaacaagcgccc 22916884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 25751803 - 25751852
Alignment:
Q  224 ctttaattttaatatgctagctttccaactatactagcagagttaactct 273  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25751803 ctttagttttaatatgctagctttccaactatactagcagagttaactct 25751852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 27620062 - 27620117
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||||    
T  27620062 attattctcatgtaaagaggtggaaatgtgcattcccataatattctgcatagatt 27620117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 44080041 - 44079994
Alignment:
Q  18 catgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||    
T  44080041 catgtaaagagacgggaatgtgcattcccatgatattacgcatagatt 44079994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 8048234 - 8048368
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||  |||||||||||| ||||||||||||| |       |||||||||| | ||||||        ||||||||||||||| || |||    
T  8048234 taacttccaattttcccaggaatgtcaatttatttgccaaacgctttttttaacaaatacctaggaatca--------tattttcattcccggataagtt 8048325  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    ||| |   |||||||||||||||| |  |||||||||||||||    
T  8048326 atttccgagaataatttgtgtttctccgaaacaaacgccccct 8048368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 22916677 - 22916729
Alignment:
Q  13 attctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||| |||||||| || ||||||||||||||||||||| ||| ||||||||||    
T  22916677 attcccatgtaaaaagttgggaatgtgcattcccatgatattctgcatagatt 22916729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 43175023 - 43174980
Alignment:
Q  22 taaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  43175023 taaagagatgggaatgtgcatttccatgatattctgcatagatt 43174980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 31577597 - 31577559
Alignment:
Q  23 aaagagatgggaatgtgcattcccatgacattatgcata 61  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  31577597 aaagaggtgggaatgtgcattcccatgatattatgcata 31577559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 2659723 - 2659790
Alignment:
Q  137 aaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgttt 205  Q
    |||||| || ||||||||||| |||||||||||||  | ||| ||||||||||  ||||||||||||||    
T  2659723 aaatacacaggaatcaaattt-catattttcattcttgagtaagttattcctaaaaataatttgtgttt 2659790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 25897917 - 25898130
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||                | ||||||||||||||||||||||||||||    
T  25897917 tattcccatataaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aacttccaattttttcaggaatgtcaag 25898015  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25898016 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaa 25898115  T
Q  212 aacaaacgccccctt 226  Q
    |||||||||||||||    
T  25898116 aacaaacgccccctt 25898130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 22213476 - 22213266
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||                 |||||||||||||||||| ||||||||||    
T  22213476 tattcccatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattg--taacttccaattttttcaagaatgtcaag 22213379  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22213378 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaa 22213279  T
Q  212 aacaaacgccccc 224  Q
    |||||||||||||    
T  22213278 aacaaacgccccc 22213266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 30493875 - 30494084
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | |||||||||||||| |||||||||||    
T  30493875 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aacttccaatttttccaggaatgtca 30493973  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||    
T  30493974 agttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttcca 30494073  T
Q  210 aaaacaaacgc 220  Q
    |||||||||||    
T  30494074 aaaacaaacgc 30494084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 30534218 - 30534427
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | |||||||||||||| |||||||||||    
T  30534218 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aacttccaatttttccaggaatgtca 30534316  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||    
T  30534317 agttatttgccaaacactttttttaacaaatacccaataatcaaattttcatattttcattcccgggtatattattcctgggaataatttgtgttttcca 30534416  T
Q  210 aaaacaaacgc 220  Q
    |||||||||||    
T  30534417 aaaacaaacgc 30534427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 36275676 - 36275534
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36275676 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 36275577  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  36275576 attcctggaaataatttgtgtttcccaaaaacaaacgccccct 36275534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 26674267 - 26674054
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||||||||||||||                 ||||||||||||||| |||||||||||    
T  26674267 attattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagatttaaaaaaaaattg----taacttccaatttttccaggaatgtca 26674172  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||||| || | |||||||||||||||||     
T  26674171 agttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttcccc 26674072  T
Q  210 aaaacaaacgcccccttt 227  Q
    ||||||||||||||||||    
T  26674071 aaaacaaacgcccccttt 26674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 26945873 - 26945659
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||||||||||||| |||||| | ||||||||||||||                 ||||||||||||||| |||||||||||    
T  26945873 attattcccatgtaaagagatgggaatgtgcagtcccataatattatgcatagatttaaaaaaaaaattg---taacttccaatttttccaggaatgtca 26945777  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||   ||||||||| || | |||||||||||||||||     
T  26945776 agttatttgccaaacactttttttaacaaatacacaagaatcaaattttcatattttcattcccatatatgttatttctggaaataatttgtgtttcccc 26945677  T
Q  210 aaaacaaacgcccccttt 227  Q
    ||||||||||||||||||    
T  26945676 aaaacaaacgcccccttt 26945659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 42394025 - 42394242
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 |||||| |||||||| || |||||||||    
T  42394025 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaattg----taactttcaatttttccatgaatgtcaa 42394120  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattt--------tcatattttcattcccgggtatgttattcctaggaataatttgtg 202  Q
    ||||||||||||||||       ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| | |||||||||||    
T  42394121 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcatattttcattcccgggtatgttattcctggaaataatttgtg 42394220  T
Q  203 tttcccaaaaacaaacgccccc 224  Q
    ||||||||||||||||||||||    
T  42394221 tttcccaaaaacaaacgccccc 42394242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 11740675 - 11740533
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||||| |||||   |||||||||||||||||||||||||||       ||||||||| || |||||||||||||||||||||||||||| |||||||    
T  11740675 taacttcctattttccaaggaatgtcaagttatttgccaaacactttttttaacaaatacacaggaatcaaattttcatattttcattcccgagtatgtt 11740576  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    ||| ||  || ||||||||||||||| ||||||||||||||||    
T  11740575 atttctgagagtaatttgtgtttccccaaaacaaacgccccct 11740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 13946373 - 13946579
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt---nnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgt 107  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||                    ||||||||||||||| ||| |||||    
T  13946373 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaattaaaaaaaaaattgtaacttccaatttttccagaaatgt 13946472  T
Q  108 caagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcc 207  Q
    ||||||||||||||||||        ||||||||||||||||||||        |||||||||| |||||||||||||||| |||||||  | |||||||    
T  13946473 caagttatttgccaaacattttttttaacaaatacccaagaatcaa--------attttcattctcgggtatgttattcctgggaataa--tatgtttcc 13946562  T
Q  208 caaaaacaaacgccccc 224  Q
    |||||||||||||||||    
T  13946563 caaaaacaaacgccccc 13946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 28611761 - 28611667
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacac-nnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccggg 176  Q
    ||||||||||||||| || |||||||||||||||||||||||||        |||||||||| | |||||||||||| || |||||||| |||||    
T  28611761 taacttccaatttttccatgaatgtcaagttatttgccaaacacttttttttaacaaatacctaggaatcaaatttttattttttcatttccggg 28611667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 36275734 - 36275693
Alignment:
Q  24 aagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  36275734 aagatatgggaatgtgcattcccatgatattatgcatagatt 36275693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 8082342 - 8082554
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||||    
T  8082342 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaag 8082439  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8082440 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaa 8082539  T
Q  212 aacaaacgccccctt 226  Q
    |||||||||||||||    
T  8082540 aacaaacgccccctt 8082554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 41958187 - 41957976
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | ||||||||||||||||||||||||||||    
T  41958187 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaatcgt-aacttccaattttttcaggaatgtcaag 41958089  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  41958088 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttcccaaa 41957989  T
Q  212 aacaaacgccccc 224  Q
    |||||||||||||    
T  41957988 aacaaacgccccc 41957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 11685741 - 11685948
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  11685741 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattg--taacttccaatttttacaggaatgtcaa 11685838  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  11685839 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctatgaataatttgtgtttcccaa 11685938  T
Q  211 aaacaaacgc 220  Q
    ||||||||||    
T  11685939 aaacaaacgc 11685948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 30801009 - 30801214
Alignment:
Q  18 catgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaagttattt 117  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||||||||||    
T  30801009 catgtaaagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaatg--taacttccaatttttccaggaatgtcaagttattt 30801106  T
Q  118 gccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaa 217  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  30801107 gccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttcccaaaaacaaa 30801206  T
Q  218 cgccccct 225  Q
    ||||||||    
T  30801207 cgccccct 30801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 18996714 - 18996572
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18996714 taacttccaatttttccaggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 18996615  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18996614 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 18996572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 18999253 - 18999111
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18999253 taacttccaatttttccaggaatgtcaagttatttaccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgtt 18999154  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18999153 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 18999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 45572867 - 45572655
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||||    
T  45572867 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaag 45572770  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||    
T  45572769 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcccgagaataatttatgtttcccaaa 45572670  T
Q  212 aacaaacgccccctt 226  Q
    |||||||||||||||    
T  45572669 aacaaacgccccctt 45572655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 13696734 - 13696876
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  13696734 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatactcaataatcaaattttcatattttcattctcgggtatgtt 13696833  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  13696834 attcctgggaataatttgtgtttcccaaaaacaaacgccccct 13696876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 24373280 - 24373069
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||    
T  24373280 attattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtca 24373183  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  24373182 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccga-tatgttattcctgggaataatttgtgtttccca 24373084  T
Q  210 aaaacaaacgccccc 224  Q
    |||||||||||||||    
T  24373083 aaaacaaacgccccc 24373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 37609163 - 37609305
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||||||||||||  |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37609163 taacttccaatttttctaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcactcccgggtatgtt 37609262  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  37609263 attcctgggaataatttgtgtttcccaaaaacaaacgccccct 37609305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 28246933 - 28247075
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| || ||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246933 taacttccaatttttccacgaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 28247032  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  28247033 attcctgggaataatttgtatttcccaaaaacaaacgccccct 28247075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 30260794 - 30260651
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||  |||||    
T  30260794 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggaaatgtt 30260695  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    |||||    |||||||||||||||||||||||||||||||||||    
T  30260694 attccagaaaataatttgtgtttcccaaaaacaaacgccccctt 30260651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 53151606 - 53151739
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53151606 taacttccaatttttccaggaatgtcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 53151705  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaac 218  Q
    |||||| |||||||  ||||||||||||||||||||    
T  53151706 attcctgggaataa--tgtgtttcccaaaaacaaac 53151739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 3777468 - 3777296
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  3777468 ttattcccatgtaaagagatggaaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattg--taacttccaatttttccaggaatgtcaa 3777371  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttatt 185  Q
    ||||| ||||||||||       |||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  3777370 gttatctgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcggatatgttatt 3777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 20307460 - 20307322
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||| ||||| || |||||| ||||||||||||||||||       ||||||||||||| ||||||||||| ||| |||||||| ||| ||||||    
T  20307460 taacttccagtttttccaagaatgttaagttatttgccaaacacttattttaacaaatacccaataatcaaatttttataatttcattctcggatatgtt 20307361  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgcc 221  Q
    ||||||   ||||||||||||||| | ||||||||||||    
T  20307360 attcctgaaaataatttgtgtttctccaaaacaaacgcc 20307322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 13696656 - 13696710
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13696656 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatt 13696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 54162910 - 54163030
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||| ||||||  |||||||||||| ||||| |||||||||       || ||||||| | |||||||||||||||||||| |||||||| || |||    
T  54162910 taacttctaattttcccaggaatgtcaacttattcgccaaacacttttattaaaaaatacctaggaatcaaattttcatatttttattcccggataagtt 54163009  T
Q  183 attcctaggaataatttgtgt 203  Q
    |||||| || |||| ||||||    
T  54163010 attcctgggtataacttgtgt 54163030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 53151532 - 53151586
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  53151532 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatt 53151586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 30260859 - 30260816
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacac 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  30260859 taacttccaatttttccaggaatgtcaagttatttgccaaacac 30260816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 18996783 - 18996729
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||| |||    
T  18996783 ttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatt 18996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 18999322 - 18999268
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||| |||    
T  18999322 ttattcccatgtaaagggatggaaatgtgcattcccatgatattatgcataaatt 18999268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 28246863 - 28246917
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| ||| |||||| ||| |||||||||||||||||| ||||||||||||||    
T  28246863 ttattcccatataaagatatgagaatgtgcattcccatgatattatgcatagatt 28246917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 20307506 - 20307469
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccat 48  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20307506 ttattctcatgtaaagagatgagaatgtgcattcccat 20307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 48332116 - 48332167
Alignment:
Q  137 aaatacccaagaatcaaattttcatattttcattcccgggtatgttattcct 188  Q
    ||||| ||||||||||||||||||||||| |||||  ||||| |||||||||    
T  48332116 aaatatccaagaatcaaattttcatatttacattcttgggtaagttattcct 48332167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 37609092 - 37609146
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| |||||||||||||| |||||| ||||  ||||| ||||||||||||||    
T  37609092 ttattcccatgtaaagagatgagaatgtacattatcatgatattatgcatagatt 37609146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 30518662 - 30518448
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||                 ||||||||||||||| ||||||||||||    
T  30518662 ttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatatattttttaaaaaaaaaattgtaacttccaatttttccaggaatgtcaa 30518563  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  30518562 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcatgggaataatttgtgtttcccaa 30518463  T
Q  211 aaacaaacgccccct 225  Q
    |||||||||||||||    
T  30518462 aaacaaacgccccct 30518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 15805752 - 15805962
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||| |||||||||    
T  15805752 tattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaatttttccagaaatgtcaag 15805848  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    ||||||| |||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15805849 ttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaaa 15805948  T
Q  212 aacaaacgccccct 225  Q
    ||||||||||||||    
T  15805949 aacaaacgccccct 15805962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 27641236 - 27641022
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnt-taacttccaattttttcaggaatgtca 109  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||                | |||||| |||||||| |||||||| ||    
T  27641236 ttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaataaaaattgtaactttcaatttttccaggaatgcca 27641137  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  27641136 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttttgtttccca 27641037  T
Q  210 aaaacaaacgccccc 224  Q
    |||||||||||||||    
T  27641036 aaaacaaacgccccc 27641022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 32597566 - 32597352
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  32597566 ttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaataaaaaaattgtaacttccaatttttccaggaatgtcaa 32597467  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||  ||||||||||||||||||||    
T  32597466 gttatttgctaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatattatttctgagaataatttgtgtttcccaa 32597367  T
Q  211 aaacaaacgccccct 225  Q
    |||||||||||||||    
T  32597366 aaacaaacgccccct 32597352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 5614534 - 5614746
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 |||||| |||||||| || |||||||||    
T  5614534 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taactttcaatttttccaagaatgtcaa 5614631  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       |||||||| |||||||||||||||| ||||||||||||||| |||| |||||||| |||||| ||||||||||||||    
T  5614632 gttatttgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgagtatattattcctgggaatagtttgtgtttcccaa 5614731  T
Q  211 aaacaaacgccccct 225  Q
    |||||||||||||||    
T  5614732 aaacaaacgccccct 5614746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 2735062 - 2734848
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | |||||||||||||| |||||||||||    
T  2735062 attattcgcatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgt-aacttccaatttttccaggaatgtca 2734964  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2734963 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaatagtttgtgtttccca 2734864  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  2734863 aaaacaaacgccccct 2734848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 38526693 - 38526482
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||                 ||||||||||||||||||||||||||||    
T  38526693 ttattctcatgtaaagagatgagaatgtgcattcccatgatattatgcatagattttaaaaaaaattg----taacttccaattttttcaggaatgtcaa 38526598  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  38526597 gttatttgccaaacactttttttaacaaatactcaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttatgtttcccaa 38526498  T
Q  211 aaacaaacgccccctt 226  Q
    ||||||||||||||||    
T  38526497 aaacaaacgccccctt 38526482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 38567512 - 38567725
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||                 ||||||||||||||| || ||||||||    
T  38567512 attattcccatgtaaagagatggggatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaagaatgtca 38567609  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38567610 agttatttgccaaacacttttttgaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttccca 38567709  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  38567710 aaaacaaacgccccct 38567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 35563728 - 35563941
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||    
T  35563728 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaatttttccaggaatgtca 35563824  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  35563825 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccggatatgttattcccggaaataatttgtgtttccca 35563924  T
Q  210 aaaacaaacgccccctt 226  Q
    |||||||||||||||||    
T  35563925 aaaacaaacgccccctt 35563941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 1197547 - 1197762
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnt-taacttccaattttttcaggaatgtca 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||                | ||||||||||||||||| |||||||||    
T  1197547 ttattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaataaaataaaattgtaacttccaattttttctggaatgtca 1197646  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  1197647 agttatttgccaaacactttttttaacaaatacccaggaatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgtttccca 1197746  T
Q  210 aaaacaaacgccccct 225  Q
    |||||| |||||||||    
T  1197747 aaaacacacgccccct 1197762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 9686506 - 9686363
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| |||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9686506 taacttccaatttttccaggaatgtcaagttatttgacaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 9686407  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9686406 attcctgggaataatttgtgtttcccaaaaacaaacgccccctt 9686363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 18916140 - 18916355
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnt-taacttccaattttttcaggaatgtca 109  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||                | ||||||||||||||| |||||||||||    
T  18916140 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatacatagatttaaaaaaaataaaaattgtaacttccaatttttccaggaatgtca 18916239  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    | |||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  18916240 aattatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctcggaataatttgtgtttccca 18916339  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  18916340 aaaacaaacgccccct 18916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 41486680 - 41486470
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||                 ||||||||||||| | ||||||||||||    
T  41486680 ttattctcatgtaaagatatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaattg--taacttccaatttatccaggaatgtcaa 41486583  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||    
T  41486582 gttatttgccaaacactttttttaacaaatatccaagaatcaaattttcatattttcagtcccggatatgttattcctgggaataatttgtgtttcccaa 41486483  T
Q  211 aaacaaacgcccc 223  Q
    |||||||||||||    
T  41486482 aaacaaacgcccc 41486470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 11661335 - 11661477
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||||||||||||||| |||||||||||||||||||||||||       |||||||||  |||||||||||||||||||||||||||||| |||| ||    
T  11661335 taacttccaattttttcaagaatgtcaagttatttgccaaacactttttttaacaaatacttaagaatcaaattttcatattttcattcccgagtatctt 11661434  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccct 225  Q
    |||| | ||||||||||||||||||||||||||||||||||||    
T  11661435 attcttgggaataatttgtgtttcccaaaaacaaacgccccct 11661477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 24697758 - 24697547
Alignment:
Q  9 gattattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtc 108  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||                 ||||||||||||||  ||||||||||    
T  24697758 gattattcccatgtaaagagatgtgaatgtgcattcccatgatattctgcatagattaaaaatta---------taacttccaattttcccaggaatgtc 24697668  T
Q  109 aagttatttgccaaacacnnnnnnn------aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtg 202  Q
    ||||||||| ||||||||             |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||    
T  24697667 aagttattttccaaacactttttttttttttaacaaatacccatgaatcaaattttcatattttcattcccatgtatgttattcctaggaataatttatg 24697568  T
Q  203 tttcccaaaaacaaacgcccc 223  Q
    |||||| ||||||||||||||    
T  24697567 tttccccaaaacaaacgcccc 24697547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 1996400 - 1996315
Alignment:
Q  141 acccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  1996400 acccaagaatcaaattttcatattttcgttcccggatatgttattcctgagaataatttgtgtttcccaaaaacaaacgccccctt 1996315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 43596165 - 43596095
Alignment:
Q  148 aatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaac 218  Q
    ||||||| |||||||||||||||  ||| |||||| || ||  |||||||||||||||||| |||||||||    
T  43596165 aatcaaaatttcatattttcattttcggatatgttttttctgagaataatttgtgtttccccaaaacaaac 43596095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 43596235 - 43596192
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacac 126  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||    
T  43596235 taactttcaattttttcaggaatgtcaaattatttgtcaaacac 43596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 2001518 - 2001464
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| |||| ||||| ||| |||||||||||| ||||| ||||||||||||||    
T  2001518 ttattcccatgaaaagatatgagaatgtgcattctcatgatattatgcatagatt 2001464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 43596307 - 43596253
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||||| ||||||||| ||||||||||||||||| | | ||| ||||||||||    
T  43596307 ttattctcgtgtaaagagttgggaatgtgcattcccgtaatattctgcatagatt 43596253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 4653785 - 4653574
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||||||||||||||||    
T  4653785 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaattg---taacttccaattttttcaggaatgtcaa 4653689  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  4653688 gttatttgccaaacactttttttaacaaatacctaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 4653589  T
Q  211 aaacaaacgccccct 225  Q
    |||||||||||||||    
T  4653588 aaacaaacgccccct 4653574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 33756604 - 33756394
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||                 |||||||||||||||| ||||||||||    
T  33756604 attattctcatgtaaa-agatgggaatgtgcattcccatgatattatgcatatatttaaaaaaaaatg-----taacttccaatttttttaggaatgtca 33756511  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||| ||       ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  33756510 agttatttgccaaatactttttttaacaaatacccgagaatcaaattttcatattttcattcccggatatgttattcctggaaataatttgtgtttccca 33756411  T
Q  210 aaaacaaacgccccctt 226  Q
    ||||||||||| |||||    
T  33756410 aaaacaaacgcgccctt 33756394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 24765286 - 24765199
Alignment:
Q  134 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgcc 221  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||    
T  24765286 aacaaatatccaggaatcaaattttcatattttcattcccgagtatattattcctgggaataatttgtgtttccccaaaacaaacgcc 24765199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 24765413 - 24765359
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  24765413 ttattcccatgtaaagagatgggaatgtgcattcccatgatattttgcatagatt 24765359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 2623312 - 2623450
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2623312 taacttccaattttttcaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 2623411  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgcc 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2623412 attcctaggaataatttgtgtttcccaaaaacaaacgcc 2623450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 24072602 - 24072388
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | |||||||||||||| |||||||||||    
T  24072602 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aacttccaatttttccaggaatgtca 24072504  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  24072503 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctggaaatagtttgtgtttccca 24072404  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  24072403 aaaacaaacgccccct 24072388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 9033957 - 9034169
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||||    
T  9033957 tattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaag 9034054  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccggg-tatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||| |||||||       ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9034055 ttatttgtcaaacactttttttaacaaatacccaagaatcaaattttaatattttcattcccggggtatgttattcctgggaataatttgtgtttcccaa 9034154  T
Q  211 aaacaaacgccccct 225  Q
    |||||||||||||||    
T  9034155 aaacaaacgccccct 9034169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 26696037 - 26695824
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||                | ||||||||||||||  |||||||||||    
T  26696037 ttattcccatgtaaagagatgggaatgtacattcccatgatattatgcatagattttttttaaaaaaattgt-aacttccaatttttctaggaatgtcaa 26695939  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26695938 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgggaataatttgtgtttcccaa 26695839  T
Q  211 aaacaaacgccccct 225  Q
    ||||||||| |||||    
T  26695838 aaacaaacgtcccct 26695824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 39502802 - 39502589
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | |||||||||||||||||||||||||||    
T  39502802 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaattgt-aacttccaattttttcaggaatgtcaa 39502704  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  39502703 gttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttcccaa 39502604  T
Q  211 aaacaaacgccccct 225  Q
    ||| |||| ||||||    
T  39502603 aaataaacaccccct 39502589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 39499462 - 39499250
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                | ||||||||||||||||||||||||||||    
T  39499462 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aacttccaattttttcaggaatgtcaag 39499364  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  39499363 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctgaaaataatttgtgtttcccaaa 39499264  T
Q  212 aacaaacgccccct 225  Q
    || |||| ||||||    
T  39499263 aataaacaccccct 39499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 29051954 - 29052169
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnt-taacttccaattttttcaggaatgtca 109  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||                  ||||||||||||||| |||||||||||    
T  29051954 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaaaattagtaacttccaatttttccaggaatgtca 29052053  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  29052054 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgggcatgttattcctgagaataatttgtgtttccca 29052153  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  29052154 aaaacaaacgccccct 29052169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 56080809 - 56080598
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  56080809 ttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaatttttccaggaatgtcaa 56080713  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    |||||||| |||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  56080712 gttatttgtcaaacactttttttaacaaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 56080613  T
Q  211 aaacaaacgccccct 225  Q
    ||| |||||||||||    
T  56080612 aaataaacgccccct 56080598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 40591057 - 40591265
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  40591057 ttattctcatgttaagaggtgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaatttttccaggaatgtcaa 40591153  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
     |||||||||||||||       || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  40591154 attatttgccaaacactttttttaataaatacccaagaatcaaattttcatattttcattctcgggtatgttattcctgggaataatttgtgtttcccaa 40591253  T
Q  211 aaacaaacgccc 222  Q
    ||||||||||||    
T  40591254 aaacaaacgccc 40591265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 44506326 - 44506118
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 ||| ||||||||||||||||||||| |||    
T  44506326 tattctcatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taatttccaattttttcaggaatgttaag 44506230  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| |||||    
T  44506229 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccagatatgttattcctggaaataatttgtgttttccaaa 44506130  T
Q  212 aacaaacgcccc 223  Q
    ||||||||||||    
T  44506129 aacaaacgcccc 44506118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 127937 - 128142
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||                 ||||||  |||||||  ||||||||||    
T  127937 attattcccatgtaaagagatgggaatgtacattcccataatattatgcatagatttaaaaaaaaattg----taacttttaatttttcaaggaatgtca 128032  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||| ||||||       ||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |    
T  128033 agttatttgcaaaacacatcttttaacaaatattcaagaatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgtttccta 128132  T
Q  210 aaaacaaacg 219  Q
    ||||||||||    
T  128133 aaaacaaacg 128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 37995592 - 37995451
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||| |||||||| ||| ||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  37995592 taactttcaatttttccagaaatatcaagttatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccggataaatt 37995493  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccc 224  Q
    ||||||  || |||||||||||||||||||||||||| ||||    
T  37995492 attcctgagattaatttgtgtttcccaaaaacaaacgtcccc 37995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 45620395 - 45620535
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||       | |||||||||| ||||||||||||| |||||||||||||| |||||||    
T  45620395 taacttccaattttcccaggaatgtcaagttatttgc-aaacactttttttagcaaatacccaggaatcaaattttcgtattttcattcccgtgtatgtt 45620493  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccc 224  Q
    |||||| | |||||||||||| |||  |||||||||||||||    
T  45620494 attcctggaaataatttgtgtatcctcaaaacaaacgccccc 45620535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 51790234 - 51790318
Alignment:
Q  137 aaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgcc 221  Q
    |||||| || |||||||||||||||||||||||||||  ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  51790234 aaatactcatgaatcaaattttcatattttcattcccatgtatgttattcatgggaataatttgtgtttccccaaaacaaacgcc 51790318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 31335050 - 31335267
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||                 ||||||||||||||  || |||||||||    
T  31335050 ttattctcatataaagagatggaaatgtgcattcccatgatattatgcatagatttaagaagtaaaaaatg-taacttccaattttcgcatgaatgtcaa 31335148  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattc----ctaggaataatttgtgtttc 206  Q
    ||||||||||||||||       || |||| || | |||||||||||||||||||| |||  ||  ||||||||||    ||  ||||||||| ||||||    
T  31335149 gttatttgccaaacactttttttaataaattcctatgaatcaaattttcatatttttattttcgactatgttattcctgactgagaataatttatgtttc 31335248  T
Q  207 ccaaaaacaaacgccccct 225  Q
    || |||||||||| |||||    
T  31335249 cccaaaacaaacgtcccct 31335267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 37995661 - 37995607
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||| |||| |||    
T  37995661 ttattcccatgtaaagagatgagaatgtgcattcccatgatattatacatatatt 37995607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 54230800 - 54230730
Alignment:
Q  153 aattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacgcccc 223  Q
    ||||||||||||||||||||||| ||||||||| |   ||||||||||| ||| || |||| ||| |||||    
T  54230800 aattttcatattttcattcccggatatgttattaccgagaataatttgttttttcccaaaataaatgcccc 54230730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 45360382 - 45360170
Alignment:
Q  12 tattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaag 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||||    
T  45360382 tattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaag 45360285  T
Q  112 ttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaa 211  Q
    |||||||||||||||       ||||||||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  45360284 ttatttgccaaacactttttttaacaaatacccaagaatcaaattttgatattttcattccgaggtatgttattcctgggaataatttgtgtttcccaaa 45360185  T
Q  212 aacaaacgccccctt 226  Q
    |||||||||||||||    
T  45360184 aacaaacgccccctt 45360170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 32550411 - 32550554
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32550411 taacttccaatttttccaggaatgtcaagttatttgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgtt 32550510  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgccccctt 226  Q
    ||||||  |||| |||||||||||||||||||||||||||||||    
T  32550511 attcctgtgaattatttgtgtttcccaaaaacaaacgccccctt 32550554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 14236604 - 14236398
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||| |||||||||||    
T  14236604 attattcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagattttaaaaaaaaaaaattgtaacttccaatttttccaggaatgtca 14236505  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||    
T  14236504 agttatttgccaaacactttttttaacaaatacccaagaatcaaattttcat--------tcccgggtatgttattcctgggaataatttgtgtttccca 14236413  T
Q  210 aaaacaaacgccccc 224  Q
    |||||||||||||||    
T  14236412 aaaacaaacgccccc 14236398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 43069011 - 43069215
Alignment:
Q  13 attctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaagt 112  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||||||| |||||||| |    
T  43069011 attcccatgtaaagagatgggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaattg---taacttccaattttttcagaaatgtcaaat 43069107  T
Q  113 tatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaa 212  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||    
T  43069108 tatttgccaaacattttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttattcctgggaataatttgtgtttttcaaaa 43069207  T
Q  213 acaaacgc 220  Q
    ||||||||    
T  43069208 acaaacgc 43069215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 5555405 - 5555196
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||| ||||||||    
T  5555405 ttattcgcatgtaaagagatgagaatgtgcattcccatgatattatgcatagattttaaaaaaaaattg---taacttccaatttttccagaaatgtcaa 5555309  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaa 210  Q
    |||||| |||||||||       |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  5555308 gttattcgccaaacactttttttaacaaatatccaagaatcaaatttttatattttcattcccgggtatgttatttctgagaataatttgtgtttcccaa 5555209  T
Q  211 aaacaaacgcccc 223  Q
    |||||||||||||    
T  5555208 aaacaaacgcccc 5555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 19565377 - 19565163
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||| |||                 ||||||||||||||| ||||||||||||    
T  19565377 ttattcccatgtaaagagatgggaatgtgcattcccatgatattatgcataaatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaa 19565280  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataa-tttgtgtttccca 209  Q
    ||||||||||||||||       || |||||||||||||||||||||||||||||||||| |||  |||||||||| | ||||||| ||||||||| |||    
T  19565279 gttatttgccaaacactttttttaagaaatacccaagaatcaaattttcatattttcatttccgaatatgttattcttgggaataattttgtgttttcca 19565180  T
Q  210 aaaacaaacgccccctt 226  Q
    |||||||||||||||||    
T  19565179 aaaacaaacgccccctt 19565163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 40125624 - 40125432
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| |||||||||| || ||||||||||||||||||| ||||||||||||||                 ||||||||||||||| ||||||||||||    
T  40125624 ttattcccatgtaaagatataggaatgtgcattcccatgatattatgcatagatttaaaaaaaaaaattg--taacttccaatttttccaggaatgtcaa 40125527  T
Q  111 gttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgttt 205  Q
    ||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||    
T  40125526 gttatatgccaaacactttttttaacaaatacccaagaatcaaattttcatattttcattcccgagtatgttgttcctgggaatagtttgtgttt 40125432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 21620252 - 21620060
Alignment:
Q  11 ttattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtcaa 110  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||                 |||||||||||||||  |||||||||||    
T  21620252 ttattcccatgtaaagagatgggaatgtacattcccatgatattatgtatagattttaaaaaaaaaattg--taacttccaatttttctaggaatgtcaa 21620155  T
Q  111 gttatttgccaaaca-cnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtt 204  Q
    ||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  21620154 gttatttgctaaacacctttttttaacaaatacccaagaatcaaattttcatattttcattcccaggtatgttattcctgggaataatttgtgtt 21620060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 4643727 - 4643587
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgtt 182  Q
    |||||||||||||| | ||||||||||| ||||| |||||||||       |||||||||||| |||||||||||||||||||||||||| || ||||||    
T  4643727 taacttccaattttcttaggaatgtcaaattattcgccaaacactttttttaacaaatacccatgaatcaaattttcatattttcattcctggatatgtt 4643628  T
Q  183 attcctaggaataatttgtgtttcccaaaaacaaacgcccc 223  Q
    |||| | |||||||||||||||||||  |||||||| ||||    
T  4643627 attcttgggaataatttgtgtttccccgaaacaaacacccc 4643587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 3656728 - 3656524
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||||                | ||||| |||||||| |||||||||||    
T  3656728 attattcccatgtacagagatgggaatatgcattcccatgatattatgcatagatttaaaaaaaaaaaattgt-aactttcaatttttccaggaatgtca 3656630  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||||||||||       |||||| |||||||||||||||||||||        ||||   |||||||||||| ||||||||||||||||||||    
T  3656629 agttatttgccaaacactttttttaacaaacacccaagaatcaaattttcat--------tccctaatatgttattcctgggaataatttgtgtttccca 3656538  T
Q  210 aaaacaaacgcccc 223  Q
    ||||||||||||||    
T  3656537 aaaacaaacgcccc 3656524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 6694058 - 6694200
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacacnnnnnnnaacaaata-cccaagaatcaaattttcatattttcattccc--gggtat 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||       |||||||| |||| ||||||||||||||||||||||||| |  ||||      
T  6694058 taacttccaattttttcaggaatgtcaagttatttgctaaacactttttttaacaaataccccacgaatcaaattttcatattttcattctcaggggttg 6694157  T
Q  180 gttattcctaggaataatttgtgtttcccaaaaacaaacgccc 222  Q
     |||||||| ||||||||||||||||||| ||| ||| |||||    
T  6694158 tttattcctgggaataatttgtgtttccccaaagcaagcgccc 6694200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 3027813 - 3027730
Alignment:
Q  135 acaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaac 218  Q
    ||||||||||| ||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||| | |||||||||    
T  3027813 acaaatacccaggaatcaaattttcatattttcattccgaggtaagttattcctgagaataatttgtgtttcactaaaacaaac 3027730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 4643798 - 4643754
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacatt 54  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||    
T  4643798 attattcccatgtaaagagatgggaatgtgcattcccatgatatt 4643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 25304381 - 25304453
Alignment:
Q  134 aacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttc 206  Q
    |||||||||||| |||| | ||||| |||||||| |||||| ||| |||||| || |||||||||||||||||    
T  25304381 aacaaatacccaggaattatatttttatattttcgttcccgagtaagttatttctgggaataatttgtgtttc 25304453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 16296884 - 16296945
Alignment:
Q  158 tcatattttcattcccgggtatgttattcctaggaataatttgtgtttcccaaaaacaaacg 219  Q
    |||||||||||||||||  || |||||||||| |||||||||||||||| |  |||||||||    
T  16296884 tcatattttcattcccgaataagttattcctaagaataatttgtgtttctccgaaacaaacg 16296945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 32550356 - 32550397
Alignment:
Q  24 aagagatgggaatgtgcattcccatgacattatgcatagatt 65  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  32550356 aagatatgggaatgtgcattcccatgatattatgcatagatt 32550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 2782456 - 2782491
Alignment:
Q  91 aattttttcaggaatgtcaagttatttgccaaacac 126  Q
    |||||||||||||||||||| |||||||||||||||    
T  2782456 aattttttcaggaatgtcaacttatttgccaaacac 2782491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 35371891 - 35371934
Alignment:
Q  83 taacttccaattttttcaggaatgtcaagttatttgccaaacac 126  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||    
T  35371891 taacttccaattttttcaggaatgccaacttatttgtcaaacac 35371934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 59230 - 59015
Alignment:
Q  10 attattctcatgtaaagagatgggaatgtgcattcccatgacattatgcatagattnnnnnnnnnnnnnnnnttaacttccaattttttcaggaatgtca 109  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||                 ||||||||||||||| |||||| ||||    
T  59230 attattcccatgtaaagagatgagaatgttcattcccatgatattatgcatagatttttaaaaaaaaaaattgtaacttccaatttttccaggaacgtca 59131  T
Q  110 agttatttgccaaacacnnnnnnnaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcctaggaataatttgtgtttccca 209  Q
    |||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  59130 agttatttgcaaaacacttttcttaacaaatacccaagaatcaaattttcatattttcattcccgggtatgttattcccgggaataatttgtgtttccca 59031  T
Q  210 aaaacaaacgccccct 225  Q
    ||||||||||||||||    
T  59030 aaaacaaacgccccct 59015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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