View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_high_29 (Length: 269)
Name: NF18684_high_29
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 37721877 - 37722120
Alignment:
| Q |
18 |
acattcagcatttgccttaacagaaatggaagtgaaaactagggtgtgctattctgaatttgaagcttgggaagagcctctgtaagtgggttttacaatt |
117 |
Q |
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| T |
37721877 |
acattcagcatttgccttaacagaaatggaagtgaaaactagggtgtgctattctgaatttgaagcttgggaagagcctctgtaagtgggttttacaatt |
37721976 |
T |
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| Q |
118 |
gattttgtgatttcacatgaatgagttttaagaagcctatctaaacattttctcttataaa-tttttgtcaatgtcaatgtacttgaatttagcatggct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37721977 |
gattttgtgatttcacatgaatgagttttaagaagcctatctaaacattttctcttataaattttttgtcaatgtcaatgtacttgaatttagcatggct |
37722076 |
T |
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| Q |
217 |
aataggatcagaagctatgtacctgagggttctctaagtataat |
260 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37722077 |
aataggatcagaagctatgtacttgagggttctctaagtataat |
37722120 |
T |
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