View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_high_30 (Length: 262)
Name: NF18684_high_30
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 36289937 - 36289711
Alignment:
| Q |
20 |
ggttatcaatacacataattttttatatgaatccaatcagattgatcaaaatacacatattttttattgaacccatatactcatacaacattatattaca |
119 |
Q |
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| T |
36289937 |
ggttatcaatacacataattttttatatgaatccaatcagattgatcaaaatacacatattttttattgaacccatatactgatacaacagtatattaca |
36289838 |
T |
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| Q |
120 |
attggatacagtttctactaattagaaaatcccctggttaatttttgaagcttctcacaaaaaacatcaacacaagatgactccaaatcatggcttaata |
219 |
Q |
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| T |
36289837 |
actggatacagtttctactaattagaaaatcgcctggttaattcttgaagcttctcacagaaaacaccaacacaagatgactccaaatcatggcttaata |
36289738 |
T |
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| Q |
220 |
agaggttcctcaatttatcatgattat |
246 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
36289737 |
agagcttcctcaatttatcatgattat |
36289711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 35035609 - 35035772
Alignment:
| Q |
83 |
ttattgaacccatatactcatacaacattatattacaattggatacagtttctactaattagaaaatcccctggttaatttttgaagcttctcacaaaaa |
182 |
Q |
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| T |
35035609 |
ttattgaaaccatataatcatacaacaatatataacagtttgatagagtttctactaattagaaaatcacctgactaattcttgaagcttctcacagaaa |
35035708 |
T |
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| Q |
183 |
acatcaacacaagatgactccaaatcatggcttaataagaggttcctcaatttatcatgattat |
246 |
Q |
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| T |
35035709 |
ccatcaacacaagatgactccaaatcttggtttaacaaaaggttcctgagtttatcatgattat |
35035772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 246
Target Start/End: Complemental strand, 35010306 - 35010161
Alignment:
| Q |
101 |
catacaacattatattacaattggatacagtttctactaattagaaaatcccctggttaatttttgaagcttctcacaaaaaacatcaacacaagatgac |
200 |
Q |
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||||||||| ||||| ||| || |||| |||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||| |||||| |
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| T |
35010306 |
catacaacaatatataacagtttgatagagtttctactaattagaaaatcacctgactaatttttgaagcttctcacagaaaccatcaacacaggatgac |
35010207 |
T |
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| Q |
201 |
tccaaatcatggcttaataagaggttcctcaatttatcatgattat |
246 |
Q |
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| T |
35010206 |
tccaaatcttggtttaacaaaaggttcctgagtttatcatgattat |
35010161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 35017420 - 35017384
Alignment:
| Q |
42 |
ttatatgaatccaatcagattgatcaaaatacacata |
78 |
Q |
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| T |
35017420 |
ttatatgaattcaatcagattgatcaaaatacacata |
35017384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 36290330 - 36290282
Alignment:
| Q |
197 |
tgactccaaatcatggcttaataagaggttcctcaatttatcatgatta |
245 |
Q |
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| T |
36290330 |
tgacaccaaatcatggcttaataagagattcctcactttatcataatta |
36290282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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