View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_high_38 (Length: 219)
Name: NF18684_high_38
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 32456578 - 32456390
Alignment:
| Q |
13 |
atgaacttggttcacaattcccataacaattcagagattaggatgtgttgagttagaaactagaagaaaacattgttttgttatactactataatgttac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32456578 |
atgaacttggttcacaattcccataacaattcagagattaggatgtgttgagttagaaactagaagaaaacattgttttgttatactactataatgttac |
32456479 |
T |
|
| Q |
113 |
atcatatactttgcaagtggtgttattgtcattgttgttgtccaaatcaaacaaagcttaggctttgatttggacggtgtagtgccaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32456478 |
atcatatactttgcaagtggtgttattatcattgttgttgtccaaatcaaacaaagctttggctttgatttggacggtgtagtgccaaa |
32456390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University