View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_high_4 (Length: 631)
Name: NF18684_high_4
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 34260118 - 34259822
Alignment:
| Q |
11 |
cacagaagaggaaatcaggctatatcaaatattgtattttttgcgtacgaagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgc |
110 |
Q |
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| T |
34260118 |
cacagaaggggaaatcaggctatatcaaatattgtattttttgcgtacgaagttctgtttaagaacatacaaggatatcaagaggatttccatgacttgc |
34260019 |
T |
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| Q |
111 |
aggatcttccttcataccttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgct |
210 |
Q |
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| T |
34260018 |
aggatcttccttcatatcttcaagtattttagcatacctttttgaaagaaatgaaccaaaataagattcaatattacaattaacaacaatttgaattgct |
34259919 |
T |
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| Q |
211 |
taggataaaaacagacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
307 |
Q |
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| T |
34259918 |
taggataaaaacagacattacaacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
34259822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 362 - 615
Target Start/End: Complemental strand, 34259767 - 34259514
Alignment:
| Q |
362 |
ccttgttctgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtggggacttttggatcatcagaag |
461 |
Q |
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| T |
34259767 |
ccttgttctgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtggggacttttggatcatcagaag |
34259668 |
T |
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| Q |
462 |
ggagcctccaaggaatggtgcatgctgaataattggtagtgtcagtatcatccatcaacaaagggaatctcaccaacagtggtgtactaattgtcattgc |
561 |
Q |
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| T |
34259667 |
ggagcctccaaggaatggtgcatgctgaataattggtagtgtcactatcatccatcaacaaagggaatctcaccaactgtggtgtactaattgtcattgc |
34259568 |
T |
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| Q |
562 |
ttcttcttctgataaatatacatttcactttcagttcagtcacaatgtagttta |
615 |
Q |
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| T |
34259567 |
ttcttcttctgataaatatacatttcactttcagttcagtcacaatgtagttta |
34259514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 370 - 575
Target Start/End: Complemental strand, 34249693 - 34249488
Alignment:
| Q |
370 |
tgagagaacatacttgtaagaggggataccactgcaaaagagattaatccaagataactcagtgggagtggggacttttggatcatcagaagggagcctc |
469 |
Q |
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| T |
34249693 |
tgagagatcatacttgtaggaggggataccactgtgtaggagattaatccaagataactcagtgggagtgacgacacatggatcatcagaagcgaacctc |
34249594 |
T |
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| Q |
470 |
caaggaatggtgcatgctgaataattggtagtgtcagtatcatccatcaacaaagggaatctcaccaacagtggtgtactaattgtcattgcttcttctt |
569 |
Q |
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| T |
34249593 |
caaggaatggtgcatgcggagtatttggtagtatcagtatcatccatcaataaagggaatctcaccaactgtgatctactacttgccattgcttcttctt |
34249494 |
T |
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| Q |
570 |
ctgata |
575 |
Q |
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| T |
34249493 |
ctgata |
34249488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 34250104 - 34249941
Alignment:
| Q |
60 |
aagttctgttaaagaacatacaaggatatcaagaggatttccatgacttgcaggatcttccttcataccttcaagtattttagcatacctttttgaaaga |
159 |
Q |
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| T |
34250104 |
aagttctgataaagaacatacaaggatatcaagaggatcgccatgacttgcaggatctttctccaaatcttcaagtattttagcatacctttttgaaaga |
34250005 |
T |
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| Q |
160 |
aatgaaccaaaataagattcaatattacaattaacaacaatttgaattgcttaggataaaaacag |
224 |
Q |
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| T |
34250004 |
aatgca-caaaagaaaatgcaatattgcaattaacaacaatttgaattacctaggataaagacag |
34249941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 34249846 - 34249771
Alignment:
| Q |
232 |
aacctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctgtacc |
307 |
Q |
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| T |
34249846 |
aacctttgagcaaaaatttcagctttatttgctgcatcaggaacagaagtatcactctcagcacgtttcctgtacc |
34249771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 20869633 - 20869703
Alignment:
| Q |
233 |
acctttgagcataaatttcggctttatttgcagcatcaggaacagaagtatcactcgcagcacgcttcctg |
303 |
Q |
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| T |
20869633 |
acctttgagcaaatttttcagctttttctgcagcattgggaacagaagtatcactctctgcacgcttcctg |
20869703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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