View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_high_9 (Length: 453)
Name: NF18684_high_9
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 37000400 - 37000824
Alignment:
| Q |
11 |
tgagattttaaataatatgggagaaaaagatgaagagaacctatctgtatcaccatgtgtgctagtgctaaaaaccaatattttcatgatcgaattggat |
110 |
Q |
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| T |
37000400 |
tgagattttaaacaatatgggaggaaaaaatgaagagaacctatctgtatcaccatgtgtgctagtgctaaaaaccaatattttcatgatcgagttggat |
37000499 |
T |
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| Q |
111 |
catcagttgaaccaagaattcatataaggttaacctcaatcaaaaactcattcaaaccacttg-aattgttgcataaaaacaacttttgaagtttattcc |
209 |
Q |
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| T |
37000500 |
catcagttgaaccaagaattcatataaggttaacctcaatcaaaaattcattcaaaccacttggaattgttgcataaaaacaacttttgaagtttattcc |
37000599 |
T |
|
| Q |
210 |
tttccatttccattttcattcacatttgatatttgcttcattttaaaggaattaaaatatctactctattgaagttgatgttggaaaattaataaaaagt |
309 |
Q |
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| T |
37000600 |
tttccatttccattttcattcacatttgatatttgcttcattttaaaggaattaaaatatctactctattgaagttgatgttggaaaattaataaaaagt |
37000699 |
T |
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| Q |
310 |
agaatagatttcggatagttaagaaagatagaagagatttgttatgcggtggtaaaaaccactcttccgaaagaannnnnnnggtgaacctcttgataca |
409 |
Q |
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| T |
37000700 |
agaatagattttggatagttaagaaagatagaagagatttgttatgcggtggtaaaaaccactctcccgaaagaaattttttggtgaacctcttgataca |
37000799 |
T |
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| Q |
410 |
atttaatatttagttttgctcctca |
434 |
Q |
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| T |
37000800 |
atttaatatttagttttgctcctca |
37000824 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 5717029 - 5716983
Alignment:
| Q |
326 |
agttaagaaagatagaagagatttgttatgcggtggtaaaaaccact |
372 |
Q |
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| T |
5717029 |
agttaggaaagatagaagagagttgttgtgccgtggtaaaaaccact |
5716983 |
T |
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