View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18684_low_1 (Length: 767)

Name: NF18684_low_1
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18684_low_1
NF18684_low_1
[»] chr3 (1 HSPs)
chr3 (241-456)||(10545187-10545402)
[»] chr6 (6 HSPs)
chr6 (521-590)||(5918432-5918501)
chr6 (535-593)||(5922116-5922174)
chr6 (2-42)||(15307855-15307895)
chr6 (2-42)||(15313149-15313189)
chr6 (432-499)||(15307898-15307965)
chr6 (432-499)||(15313192-15313259)
[»] chr7 (1 HSPs)
chr7 (419-499)||(10596448-10596528)
[»] chr8 (1 HSPs)
chr8 (533-598)||(36164932-36164996)
[»] chr4 (1 HSPs)
chr4 (420-499)||(46142883-46142962)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 241 - 456
Target Start/End: Complemental strand, 10545402 - 10545187
Alignment:
Q  241 tgatatttattttcattgctgaaggatgaaggtgttacaactatatatagagttacaatgatagtatatgctaagatattgtgaactctatcttatagga 340  Q
    |||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  10545402 tgatatctgttttcattactgaagcatgaaggtgttacaactatatatagagttacaatgatagtatatgttaagctattgtgaactctatattatagga 10545303  T
Q  341 tcatgtcctctatcataactaactctgagagttagttacaaccaactttatcactagggttcttaataacctgtggactaagtaattgtgccctagcgtg 440  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  10545302 tcacgtcctctatcataactaactctgagagttagttacaaccaactttatcactagggttgttaataacccgtggactaagtaactgtgccctagcgtg 10545203  T
Q  441 ttcttcttccttattg 456  Q
    ||||||||||||||||    
T  10545202 ttcttcttccttattg 10545187  T

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Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 521 - 590
Target Start/End: Complemental strand, 5918501 - 5918432
Alignment:
Q  521 tgtatatactcacattgtatctccattcacaaattaatgagaataacacttctcattcatattctttctc 590  Q
    ||||||||  ||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  5918501 tgtatataaacaccttgtatcttcattcacaagttaatgagaataacacttttcattcatattctttctc 5918432  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 535 - 593
Target Start/End: Complemental strand, 5922174 - 5922116
Alignment:
Q  535 ttgtatctccattcacaaattaatgagaataacacttctcattcatattctttctctct 593  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  5922174 ttgtatcttcattcacaagttaatgagaataacacttttcattcatattctctctctct 5922116  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15307855 - 15307895
Alignment:
Q  2 tgaacaaaaaacggactagactgatcaagaacaatctcaga 42  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  15307855 tgaacaaaaaatggactagactgatcaagaacaatctcaga 15307895  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15313149 - 15313189
Alignment:
Q  2 tgaacaaaaaacggactagactgatcaagaacaatctcaga 42  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  15313149 tgaacaaaaaatggactagactgatcaagaacaatctcaga 15313189  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 499
Target Start/End: Original strand, 15307898 - 15307965
Alignment:
Q  432 cctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata 499  Q
    ||||||||||||||||||||||||| ||||||   |||| |||||||| || ||||| ||||| ||||    
T  15307898 cctagcgtgttcttcttccttattggctagcaagcttgactctaactccttgatatcttgttttaata 15307965  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 499
Target Start/End: Original strand, 15313192 - 15313259
Alignment:
Q  432 cctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata 499  Q
    ||||||||||||||||||||||||| ||||||   |||| |||||||| || ||||| ||||| ||||    
T  15313192 cctagcgtgttcttcttccttattggctagcaagcttgactctaactccttgatatcttgttttaata 15313259  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 499
Target Start/End: Complemental strand, 10596528 - 10596448
Alignment:
Q  419 taagtaattgtgccctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata 499  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||   |||| || |||||||| ||||| ||||||||||    
T  10596528 taagtaattgtgccctagcgtgttcttcctccttattggctagcaagcttgactccaactcttttatatcttgtttcaata 10596448  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 598
Target Start/End: Complemental strand, 36164996 - 36164932
Alignment:
Q  533 cattgtatctccattcacaaattaatgagaataacacttctcattcatattctttctctcttaata 598  Q
    |||||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||    
T  36164996 cattgtatcttcattcacaagt-aatgagaacaacacttttcattcatattctttctctcttaata 36164932  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 499
Target Start/End: Complemental strand, 46142962 - 46142883
Alignment:
Q  420 aagtaattgtgccctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata 499  Q
    |||||||| |||| |||||||||||||||||||||||  |||||   |||| |||||||| || || || ||||||||||    
T  46142962 aagtaattatgccgtagcgtgttcttcttccttattgggtagcaagcttgactctaactcattgatgtcttgtttcaata 46142883  T

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