View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_11 (Length: 423)
Name: NF18684_low_11
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 6945036 - 6944633
Alignment:
| Q |
16 |
aagaagctgcctttttcctttctattttgtagatgctgcaaagcaaaaaacagctaggaattctgagtgtggatcctatatgatattcttttcctcttta |
115 |
Q |
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| T |
6945036 |
aagaagctgcctttttcctttctattttgtagatgctgcaaagcaaaaaacagctaggaattctgagtgtggatcctatatgatattcttttcctcttta |
6944937 |
T |
|
| Q |
116 |
gtttactcaatgtaatctatcatccatatatgtttctcacaaatcacaatagtaatcaaactcctaaaaccacattttctagaatttgttttgtttttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6944936 |
gtttactcaatgtaatctatcatccatatatgtttctcacaagtcacaatagtaatcaaactcctaaaaccacattttctagaatttgttttgtttttaa |
6944837 |
T |
|
| Q |
216 |
tacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattgaaaaacagtaaggaagaacaactattaaataatnnnnnnncagta |
315 |
Q |
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| T |
6944836 |
tacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattgaaaaacagtaaggaagaacaactattaaataataaaaaaacagta |
6944737 |
T |
|
| Q |
316 |
atctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataacccttgcagatgttctttcttagtaagtcaaatcagctaaaacctat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
6944736 |
atctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataactcttgcagatattctttcttagtaagtcaaattagctaaaacctat |
6944637 |
T |
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| Q |
416 |
gcta |
419 |
Q |
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|||| |
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| T |
6944636 |
gcta |
6944633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 7474287 - 7474494
Alignment:
| Q |
69 |
ctaggaattctgagtgtggatcctatatgatattcttttcctctttagtttactcaatgtaatctatcatccatatatgtttctcacaaatcacaatagt |
168 |
Q |
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|||||||||| ||||||| ||||||||||||| |||||||||| | || |||||| ||| || |||| ||||||||||||||| || |||| |
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| T |
7474287 |
ctaggaattccaagtgtgggtcctatatgatatctttttcctcttcaacttcctcaatctaaactctcattcatatatgtttctcaaaa-------tagt |
7474379 |
T |
|
| Q |
169 |
aatcaaactcctaaaaccacattttctagaatttgttttgtttttaatac--agaaagacatcttttgttgcatttctacatgaaaacaactattaaata |
266 |
Q |
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| |||||||||||||||||| || |||||| |||||||||||||||| || | |||| |||||||||||| ||| ||||||| |||||||||| ||||| |
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| T |
7474380 |
actcaaactcctaaaaccactttatctagattttgttttgtttttaacacatataaaggcatcttttgttgtattgctacatgcaaacaactatcaaata |
7474479 |
T |
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| Q |
267 |
attgaaaaacagtaa |
281 |
Q |
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|| ||| ||||||| |
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| T |
7474480 |
atccaaagacagtaa |
7474494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 417
Target Start/End: Original strand, 7474499 - 7474597
Alignment:
| Q |
321 |
agagaaatgtgatagat---gttggtaaacatagttgatcaatgatcataacccttgcagatgttctttcttagtaagtcaaatcagctaaaacctatgc |
417 |
Q |
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|||||||||||| |||| || |||||||||| |||||||||||||| ||| |||||| ||||||||||||| |||| | ||| ||||||||| ||||| |
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| T |
7474499 |
agagaaatgtgaaagatctggtaggtaaacataattgatcaatgatcacaactcttgcaaatgttctttcttaataagac-aattagctaaaacatatgc |
7474597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 7485219 - 7485267
Alignment:
| Q |
321 |
agagaaatgtgatagatgttggtaaacatagttgatcaatgatcataac |
369 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
7485219 |
agagaaatttgatagatgttggtaaagataattgatcaattatcataac |
7485267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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