View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18684_low_12 (Length: 404)

Name: NF18684_low_12
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18684_low_12
NF18684_low_12
[»] chr1 (12 HSPs)
chr1 (2-388)||(13101849-13102235)
chr1 (1-388)||(13069132-13069519)
chr1 (1-331)||(13214394-13214724)
chr1 (3-388)||(13008049-13008434)
chr1 (2-387)||(13205321-13205706)
chr1 (10-380)||(30367055-30367428)
chr1 (1-150)||(13162623-13162772)
chr1 (15-204)||(13005867-13006056)
chr1 (1-131)||(13095520-13095650)
chr1 (10-134)||(19278109-19278233)
chr1 (6-148)||(13130932-13131074)
chr1 (10-135)||(13064166-13064291)
[»] chr6 (3 HSPs)
chr6 (10-227)||(31376520-31376740)
chr6 (246-380)||(31376366-31376501)
chr6 (10-148)||(31385227-31385366)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 388
Target Start/End: Complemental strand, 13102235 - 13101849
Alignment:
Q  2 taccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggagg 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13102235 taccaatcaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggagg 13102136  T
Q  102 aacgtttcgatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaat 201  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13102135 aacgtttcgatttgaaggagcctggttcacaaacactggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaat 13102036  T
Q  202 tacggaagggggtccaacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgttta 301  Q
    ||||||||||||||||||||||||||||              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13102035 tacggaagggggtccaacttccaagatattttttatttttttcaaggtagtattttaaattctcatcccgacgtatggaaacaacagagggcaatgttta 13101936  T
Q  302 attcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactaccgtttctta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13101935 attcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactatgaagaaaaagctggagaagtgcctactaccgtttctta 13101849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 13069132 - 13069519
Alignment:
Q  1 gtaccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggag 100  Q
    ||||||||||||||||||||| ||||||||||||  |||||| || || ||||||||||||||||||||| | |||||||| |||| |||||||||||||    
T  13069132 gtaccaattaattggccaatatttggtatgctactggcgcttatgtgtaacctgtccaatttccatgatcgtgcaaccttaattttgaaacatcatggag 13069231  T
Q  101 gaacgtttcgatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaa 200  Q
    |||||||| |||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  13069232 gaacgtttagatttggaggagcctggttcacaaacacaagctttattggtaccagtgatccaatgaatgttgaacacattgcgagcaagaattttggcaa 13069331  T
Q  201 ttacggaagggggtccaacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgttt 300  Q
     ||||||||||||||||||||| |||| |                || | ||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  13069332 ctacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattcccacgtatggaaacaacagaggacaatgttt 13069431  T
Q  301 aattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactaccgtttctta 388  Q
     |||||| ||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||    
T  13069432 cattcatttcttaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatttctta 13069519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 13214724 - 13214394
Alignment:
Q  1 gtaccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggag 100  Q
    |||||||| ||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  13214724 gtaccaatcaattggccaataattggtatgctaccgacgattttgcgtcccctgtccaatttccatgattatacaaccttagttttgaaacatcatggag 13214625  T
Q  101 gaacgtttcgatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaa 200  Q
    ||| ||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13214624 gaatgtttcgatttgagtgagcctggttcacaaacacaagctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttggcaa 13214525  T
Q  201 ttacggaagggggtccaacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgttt 300  Q
    ||||||||||||  |||||||||||||||                |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  13214524 ttacggaaggggccccaacttccaagatattttttatttttttggaggtagtattttaaattctaattccgacgtatgaaaacaacagaggacaatgttt 13214425  T
Q  301 aattcatatctcaaaaggaaaaccttcatga 331  Q
    ||||||| ||||||||| |||| ||||||||    
T  13214424 aattcatttctcaaaagaaaaatcttcatga 13214394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 388
Target Start/End: Complemental strand, 13008434 - 13008049
Alignment:
Q  3 accaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggagga 102  Q
    ||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13008434 accaattaattggccaataattggtatgctacctgggattttgcatcacctgtccaatttccatgatcatacaaccttatttttgaaacatcatggagga 13008335  T
Q  103 acgtttcgatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaatt 202  Q
    || ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||| |    
T  13008334 acatttcgatttgaaggagcttggttcacaaacacaagctttatcggtaccagtgatccgatgaatgttgatcacatcgcgagcaagaattttggcaact 13008235  T
Q  203 acggaagggggtccaacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgtttaa 302  Q
    |||||||||||||||||||| |||| |                || | ||||||||||||||| | || || |||||||||||||| |  |||||||| |    
T  13008234 acggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctagttcccacatatggaaacaacagcgaacaatgtttca 13008135  T
Q  303 ttcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactaccgtttctta 388  Q
    ||||| |||||||||||||||||||| ||| || |||||||||||| ||||||||||| ||||||| ||| ||||||| |||||||    
T  13008134 ttcatttctcaaaaggaaaaccttcaagaactttttccaacaaactatgaagaaaaaggtggagaactgcttactaccatttctta 13008049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 13205706 - 13205321
Alignment:
Q  2 taccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggagg 101  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||| | | ||| ||||||||| ||  ||||||| |||| |||| | |||||||    
T  13205706 taccaattaatttgccaataattggtatgctaccgtcgcttttgcgtcacttattcaaattccatgattatctaaccttaattttgaaacgtaatggagg 13205607  T
Q  102 aacgtttcgatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaat 201  Q
    ||| ||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||| |||||||| | ||||||||  ||||||||||| ||||     
T  13205606 aacatttcgatttgaaggagcctggttcacaaacacaagctttatcgttacaagtgatccattgaatgttgaccacattgcaggcaagaattttggcaac 13205507  T
Q  202 tacggaagggggtccaacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgttta 301  Q
    ||||||||||||||||||||| |||| |                || | ||||||||||||||||| || |||||||||||||||||||| ||||||||     
T  13205506 tacggaagggggtccaacttcaaagaaatttttgatttttttggagatggtattttaaattctaattccaacgtatggaaacaacagaggacaatgtttc 13205407  T
Q  302 attcatatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactaccgtttctt 387  Q
    |||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||    
T  13205406 attcatttctcaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactacctactaccatttctt 13205321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 30367055 - 30367428
Alignment:
Q  10 aattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacgtttc 109  Q
    |||||||||||| |||||||||||    || | |||||||| ||||| |||||| |||| |||   ||||||||||| |||  |||||||||||||||||    
T  30367055 aattggccaatagttggtatgctattgtcggtgttgcgtcatctgtcaaatttcaatgaccatttcaccttagttttgaaatgtcatggaggaacgtttc 30367154  T
Q  110 gatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaattacggaag 209  Q
    ||||||||||| |||| |||||||||||  ||||||||| |||   |||||||||||| ||||| ||||| || |||||||||||| |||| ||||| ||    
T  30367155 gatttgaaggaccctgattcacaaacacaagctttatcgctactgctgatccaatgaacgttaaccacatcgcaagcaagaattttggcaactacgggag 30367254  T
Q  210 ggggtc---caacttccaagatannnnnnnnnnnnnncaaggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgtttaattca 306  Q
    ||||||    ||||||||||| |                |||| ||||| | |||||| || || ||||||||||| |  |||||||||||||| |||||    
T  30367255 ggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttcattca 30367354  T
Q  307 tatctcaaaaggaaaaccttcatgaatttcttccaacaaactttgaagaaaaagctggagaagtgcctactacc 380  Q
      |||||||||||||| ||||| ||| || ||||||||||||   || |||||||||||||| | |||||||||    
T  30367355 attctcaaaaggaaaagcttcaagaacttgttccaacaaactagtaaaaaaaagctggagaaattcctactacc 30367428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13162772 - 13162623
Alignment:
Q  1 gtaccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggag 100  Q
    |||||||||||||||||||||||||||||||||||| |  |||||| ||| || ||| ||||||||||| || ||||| | ||||| || | | ||||||    
T  13162772 gtaccaattaattggccaataattggtatgctaccaacatttttgcatcatctctccgatttccatgattatgcaaccattgttttgaagcgtaatggag 13162673  T
Q  101 gaacgtttcgatttgaaggagcctggttcacaaacacgggctttatcggt 150  Q
    |||| | ||||||| ||||| ||||||||||||||||  ||||| |||||    
T  13162672 gaacttatcgatttcaaggaccctggttcacaaacacaagctttgtcggt 13162623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 13006056 - 13005867
Alignment:
Q  15 gccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacgtttcgattt 114  Q
    |||| ||| ||||||||||||   | ||||| |||| || |||||||| |||||| || ||||||| |||||||| |||||||||||||| ||||||||     
T  13006056 gccagtaaatggtatgctaccgaggtttttgagtcatctatccaatttacatgattatgcaacctttgttttaaagcatcatggaggaacttttcgattc 13005957  T
Q  115 gaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaattac 204  Q
    |||||  |||| | |||||| ||  |||||||||  |||| |||||||||||| ||| | |||||  | |||||||||||| | ||||||    
T  13005956 gaagggccctgatacacaaatacaagctttatcgcgaccactgatccaatgaacgttgaccacatcacaagcaagaattttggtaattac 13005867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13095650 - 13095520
Alignment:
Q  1 gtaccaattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggag 100  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||| ||| || ||| ||||||||||| || ||||| | ||||| || |  |||||||    
T  13095650 gtaccaattaattggccaataattggtatgctaccggcatttttgcatcatctctccgatttccatgattatgcaaccattgttttgaagcgccatggag 13095551  T
Q  101 gaacgtttcgatttgaaggagcctggttcac 131  Q
    |||| |||| | || ||||  ||||||||||    
T  13095550 gaacttttctaattaaagggccctggttcac 13095520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 19278109 - 19278233
Alignment:
Q  10 aattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacgtttc 109  Q
    ||||||||||||||||| ||||||||| |  |||||| | |||| |||||  | |||||| || ||||||||||||| |||||||||||||| || ||||    
T  19278109 aattggccaataattggcatgctaccatcagttttgcataacctatccaagattcatgattatgcaaccttagttttgaaacatcatggaggtacttttc 19278208  T
Q  110 gatttgaaggagcctggttcacaaa 134  Q
      ||| ||||| | |||||||||||    
T  19278209 agtttaaaggaccttggttcacaaa 19278233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 13131074 - 13130932
Alignment:
Q  6 aattaattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacg 105  Q
    |||||||||||||||||||||||| |||||  |  ||||| |||| || ||| ||| ||||||| || ||||| | ||||| || | | ||||||||||     
T  13131074 aattaattggccaataattggtatactaccgtcatttttgtgtcatctctccgattaccatgattattcaaccattgttttgaagcgttatggaggaact 13130975  T
Q  106 tttcgatttgaaggagcctggttcacaaacacgggctttatcg 148  Q
    | ||||||| ||||  ||||||||||||||||  |||||||||    
T  13130974 tgtcgatttcaagggccctggttcacaaacacaagctttatcg 13130932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 13064166 - 13064291
Alignment:
Q  10 aattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacgtttc 109  Q
    |||||||||||| |||| ||||||||| ||  | ||| | |  | ||||||| | ||||| ||| |||||||||||| ||||||||||| || || |||     
T  13064166 aattggccaatacttggaatgctaccatcgactctgcataatatttccaattactatgattatataaccttagttttgaaacatcatggtggcactttta 13064265  T
Q  110 gatttgaaggagcctggttcacaaac 135  Q
    | ||||||||| ||||||||||||||    
T  13064266 ggtttgaaggatcctggttcacaaac 13064291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 31376740 - 31376520
Alignment:
Q  10 aattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacatcatggaggaacgtttc 109  Q
    |||||||||||| ||||||||||||   || | |||||||| ||||| |||||| || | |||   ||||||||||| |||  ||||| ||||| |||||    
T  31376740 aattggccaatagttggtatgctactgtcggtgttgcgtcatctgtcaaatttcaataaccatgtcaccttagttttgaaaggtcatgaaggaatgtttc 31376641  T
Q  110 gatttgaaggagcctggttcacaaacacgggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaattacggaag 209  Q
    ||||||||||| ||||||||||||||||  |||||||||  ||   ||||||||| || ||||| ||||| || |||||||||||| |||| ||||| ||    
T  31376640 gatttgaaggaccctggttcacaaacacaagctttatcgccactgctgatccaattaacgttaaccacatcgcaagcaagaattttggcaactacgggag 31376541  T
Q  210 ggggtc---caacttccaaga 227  Q
    ||||||   ||||||||||||    
T  31376540 ggggtctatcaacttccaaga 31376520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 31376501 - 31376366
Alignment:
Q  246 aggtagtattttaaattctaatcccgacgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaa 345  Q
    |||| ||||| | |||||| || || ||||||||||| |  ||||| |||||||| |||||  |||||||||||||| ||||| ||| || || ||||||    
T  31376501 aggtggtattgtcaattctgattcccacgtatggaaagagaagaggacaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgtttcaacaa 31376402  T
Q  346 act-ttgaagaaaaagctggagaagtgcctactacc 380  Q
    |||  | || |||||||||||||| | |||||||||    
T  31376401 actagtcaaaaaaaagctggagaaattcctactacc 31376366  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 31385227 - 31385366
Alignment:
Q  10 aattggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttcc-atgatcatacaaccttagttttaaaacatcatggaggaacgttt 108  Q
    |||||||||||||||  | |||||| | || |||||| | | ||| ||||||| | ||||||||   || |||||||  |||| ||||||||||||||||    
T  31385227 aattggccaataatttatttgctactatcggttttgcattatctgcccaattttcgatgatcatttcactttagtttcgaaacgtcatggaggaacgttt 31385326  T
Q  109 cgatttgaaggagcctggttcacaaacacgggctttatcg 148  Q
    | ||| |||| | ||||||||||||||||  |||||||||    
T  31385327 caattcgaagtatcctggttcacaaacacaagctttatcg 31385366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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