View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_low_16 (Length: 388)
Name: NF18684_low_16
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 36 - 380
Target Start/End: Original strand, 35619348 - 35619692
Alignment:
| Q |
36 |
tgtcaattcctcagcttcgtcattgtcatgcctcgaaatgctcctcccgtcgttactccgttaccggctccgacggatctctcacaaaatccgttctata |
135 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619348 |
tgtcaattcctcatcttcgtcattgtcatgcctcgaaatgctcctcccgtcgttactccgttaccggctccgacggatctctcacaaaatccgttctata |
35619447 |
T |
|
| Q |
136 |
ttcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaattaagccaacttctcag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619448 |
ttcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaattaagccaacttctcag |
35619547 |
T |
|
| Q |
236 |
caaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcctagagcctcatc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619548 |
caaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcctagagcctcatc |
35619647 |
T |
|
| Q |
336 |
tttgcagattcaaggatacaagacgttccattccaggcctatgct |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35619648 |
tttgcagattcaaggatacaagacgttccattccaggccaatgct |
35619692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 6568038 - 6567983
Alignment:
| Q |
246 |
caaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcagg |
301 |
Q |
| |
|
|||||||| || ||||| | |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
6568038 |
caaactcactacaatgctggtatgagagttctcaaatatctcaaaggatgtccagg |
6567983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 44666893 - 44666826
Alignment:
| Q |
207 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
274 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
44666893 |
atcacacaacaattaagccaatttctttctaaaccaacacaaactcatcataatgcagctctgagagt |
44666826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 19813128 - 19813052
Alignment:
| Q |
198 |
attacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
274 |
Q |
| |
|
||||||| ||| || |||||||| ||||| ||||| |||||||||||| | ||| |||||||| ||||||||||| |
|
|
| T |
19813128 |
attacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagt |
19813052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 14040708 - 14040776
Alignment:
| Q |
207 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
275 |
Q |
| |
|
|||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||| ||| |||||||| |
|
|
| T |
14040708 |
atcactcaacaacttagtcaatttctcagtaaacctacacatacccattacaatgctgctctgagagtt |
14040776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University