View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_18 (Length: 362)
Name: NF18684_low_18
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 25175945 - 25176285
Alignment:
| Q |
1 |
tgagttcacaatcaccctatgttccacactcttgtatattgcattgctcagcacctaaaacatataatcatcacataaaatatttattaattaccatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
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| T |
25175945 |
tgagttcacaatcaccctatgttccacactcttgtatattgcattgctcagcacctaaaac--ataaacatcatataaaatatttattaattaccatcaa |
25176042 |
T |
|
| Q |
101 |
ccactaattgttgaaatc----ttaacatcacaataatattaatttgactnnnnnnnnnngaatagtcattgtgcaccattttaaaatggtgtatattgc |
196 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
25176043 |
ccactaattgttgaactcttagttaacatcacaataatattaatttgactaaaaaaac---aatagtcattttgcaccattttaaaatggtgtatgttgc |
25176139 |
T |
|
| Q |
197 |
aatcattttattggtataacctctcatttgtttatgctaagttaatggctatag-nnnnnnnnncgtgaggaatgtaatggctatagtatatggtctggt |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25176140 |
aatcattttattggtataacttctcatttgtttatgctaagttaatggctatagttttttttttcgtgaggaatgtaatggctatagtatatggtctggt |
25176239 |
T |
|
| Q |
296 |
gtatcaatgtagatttagattttatggaccatacacctcacattta |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25176240 |
gtatcaatgtagatttagattttatggaccatacacctcacattta |
25176285 |
T |
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