View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_20 (Length: 353)
Name: NF18684_low_20
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_20 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 90 - 343
Target Start/End: Original strand, 47836978 - 47837231
Alignment:
| Q |
90 |
cttcattataagaaaattacagagtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgat |
189 |
Q |
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| T |
47836978 |
cttcattataagaaaattacagtgtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgat |
47837077 |
T |
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| Q |
190 |
gtggtagcctctacatcgtcatcgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttca |
289 |
Q |
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| T |
47837078 |
gtggtagcctctacatcgtcatcgcaattgcagtgtgatctaaaatcacttgtatgcttgcatcataactgcatcaaacaatttcggccatgtttgttca |
47837177 |
T |
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| Q |
290 |
aatcttctcaccaaaacataacatttcagaaccccaaatgtcagtctacttcat |
343 |
Q |
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| T |
47837178 |
aatcttctcaccaaaatataaaatttcagaaccccaaatgtcagtctacttcat |
47837231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 38750884 - 38750795
Alignment:
| Q |
214 |
caattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctcaccaa |
303 |
Q |
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| T |
38750884 |
caatagcattgtgatcttcaatcacgtgtatggtcgcatcggaactgcatcacacgattttggtaatgtttgttcaaatcttctcaccaa |
38750795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 49972 - 49885
Alignment:
| Q |
212 |
cgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctca |
299 |
Q |
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| T |
49972 |
cgcaagtgtagtgttatcttcaatcatgtgtatgggcgcatcgtaactgcataacacgatttcggccatgtttgttcaaaccttctca |
49885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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