View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_21 (Length: 342)
Name: NF18684_low_21
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 45402944 - 45403264
Alignment:
| Q |
1 |
cccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcaccatatccttgtccacaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45402944 |
cccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcatcatatccttgtccacaaaa |
45403043 |
T |
|
| Q |
101 |
tcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctcacttcatacttttgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45403044 |
tcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctcacttcataattttgac |
45403143 |
T |
|
| Q |
201 |
ctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaatagcttctctacgttcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403144 |
ctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaatagcttctctacgttcttg |
45403243 |
T |
|
| Q |
301 |
gagagtctctctagctgccac |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45403244 |
gagagtctctctagctgccac |
45403264 |
T |
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