View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_low_22 (Length: 341)
Name: NF18684_low_22
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 37946250 - 37945938
Alignment:
| Q |
18 |
aaaattgcctttagaatcaacggaaacttggacaatattttgtttcaaatcaatgagaggttcaagttcaagtataactataaacaaatnnnnnnnnnnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37946250 |
aaaattgcctttagaatcaacggaaacttcgacaatattttgtttcgaatcaatgagaggttcaagt------ataactataaacaaataaaaaaaaa-- |
37946159 |
T |
|
| Q |
118 |
nnnctaattataaaacatgatcttagattgggatgtaacatgaattgtcttagaacttgaatctgatatgttactaagcaatctaaatgaccaacagggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37946158 |
---ctaattataaaacatgatcttagattgggatgtaacatgaattgtcttagaacttgaatctgatatgttactaagcaatctaaatgaccaacagggt |
37946062 |
T |
|
| Q |
218 |
agtcccctaaaaatgcataattaacacaacacaaactcgcaaaattatccataagaaatcttgagaattagatcctaagtggaaaaagttagccttatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37946061 |
agtcccctaaaaatgcataattaacacaacacaatctcgcaaaattatccataagaaatcttgacaattagatcctaagtggaaaaagttagccttatcc |
37945962 |
T |
|
| Q |
318 |
tccttttgtgatccatacgatatc |
341 |
Q |
| |
|
||| ||| |||||||||||||||| |
|
|
| T |
37945961 |
tccgtttatgatccatacgatatc |
37945938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University