View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18684_low_28 (Length: 285)
Name: NF18684_low_28
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_28 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 43043731 - 43043987
Alignment:
| Q |
14 |
tgtgtcatggtgagctgctgttcagtttagtaggatatatatgagtaaaagttctttctggtcctagacagtagcagaaagaaaacattgagcattgtta |
113 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43043731 |
tgtgtcatggtgagctgttgttcagtacagtaggatatatatgagtaaaagttctttctggtcctagacagtagcagaaagaaaacattgagcattgtta |
43043830 |
T |
|
| Q |
114 |
gcaaactcaagtattacaatcatcacatgaaaaccaaacctatcattgcattgcggtttattttgcattttcgacaaactaattttccttcaacaaccat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43043831 |
gcaaactcaagtattacaatcatcacatgaaaaccatacctatcattgcattgcggtttattttgcattttcgacaaactaattttccttcaacaaccat |
43043930 |
T |
|
| Q |
214 |
aacagtagaggcacatttattatcatattcaactctgacttttttaggtgataaacc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43043931 |
aacagtagaggcacatttattatcatattcaactctgacttttttaggtgataaacc |
43043987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 25434859 - 25434600
Alignment:
| Q |
14 |
tgtgtcatggtgagctgctgttcagtttagtaggatatatatgagtaaaagttctttctggtcctagacagtagcag---aaagaaaacattgagcattg |
110 |
Q |
| |
|
|||||||||||||| || |||||| | | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
25434859 |
tgtgtcatggtgagttgttgttcaatacaattggatatatatgagtaaaagttctttctggtcctagacagtagcagcagaaagaaatcattgagcattg |
25434760 |
T |
|
| Q |
111 |
ttagcaaactcaagtattacaatcatcacatgaaaaccaaacctatcattgcattgcggtttattttgcattttcgacaaactaattttccttcaacaac |
210 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25434759 |
ttaggaaactcaagtattacaatcgtcacatgaaaaccaaaactatcattgcattgcggtttattttgcattttcgacaaactcattttccttcaacaac |
25434660 |
T |
|
| Q |
211 |
cataacagtagaggcacatttattatcatattcaactctgacttttttaggtgataaacc |
270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25434659 |
cataacagtagaggcacatttagtatcatattcaactcagacttttttaggtgataaacc |
25434600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 46 - 270
Target Start/End: Original strand, 50828851 - 50829078
Alignment:
| Q |
46 |
ggatatatatgagtaaaagttctttctggtcctagacagtagca---gaaagaaaacattgagcattgttagcaaactcaagtattacaatcatcacatg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
50828851 |
ggatatatatgagtaaaagttctttctggtcctagacagtagcagcagaaagaaatcattgagcattgttaggaaactcaagtattacaatcgccacatg |
50828950 |
T |
|
| Q |
143 |
aaaaccaaacctatcattgcattgcggtttattttgcattttcgacaaactaattttccttcaacaaccataacagtagaggcacatttattatcatatt |
242 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50828951 |
aaaaccaaaactatcattgcattgcggtttatgttgcattttcgagaaactcattttccttcaacaaccataacagtagaggcacatttagtatcatatt |
50829050 |
T |
|
| Q |
243 |
caactctgacttttttaggtgataaacc |
270 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
50829051 |
caactctgactttcttaggtgataaacc |
50829078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 46 - 270
Target Start/End: Complemental strand, 50847002 - 50846775
Alignment:
| Q |
46 |
ggatatatatgagtaaaagttctttctggtcctagacagtagcag---aaagaaaacattgagcattgttagcaaactcaagtattacaatcatcacatg |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
50847002 |
ggatatatatgagtaaaagttctttctggtcctagacagtagcagcagaaagaaatcattgagcattgttaggaaactcaagtattacaatcgccacatg |
50846903 |
T |
|
| Q |
143 |
aaaaccaaacctatcattgcattgcggtttattttgcattttcgacaaactaattttccttcaacaaccataacagtagaggcacatttattatcatatt |
242 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50846902 |
aaaaccaaaactatcattgcattgcggtttatgttgcattttcgagaaactcattttccttcaacaaccataacagtagaggcacatttagtatcatatt |
50846803 |
T |
|
| Q |
243 |
caactctgacttttttaggtgataaacc |
270 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
50846802 |
caactctgactttcttaggtgataaacc |
50846775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 80765 - 80842
Alignment:
| Q |
50 |
atatatgagtaaaagttctttctggtcctagacagtagcagaaagaaaa-cattgagcattgttagcaaactcaagta |
126 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
80765 |
atatatgagtaaaagttctttctggtcatagatagtagcagaaagaaaatcattgagcattgttagtaaactcaagta |
80842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 771026 - 770948
Alignment:
| Q |
50 |
atatatgagtaaaagttctttctggtcctagacagtagcagaaagaaaacattgagcattgttagcaaactcaagtatt |
128 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
771026 |
atatatgattaaaagttatttctggtcctagatagtagcagaaagaaatcattgagcattgttagtaaacttaagtatt |
770948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 8027930 - 8028003
Alignment:
| Q |
50 |
atatatgagtaaaagttctttctggtcctagacagtagcagaaagaaaacattgagcattgttagcaaactcaagta |
126 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
8027930 |
atatatgagtaagagttctttctagtcctagatagtagcagaaagaaatcattg---attgttagtaaactcaagta |
8028003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University