View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_29 (Length: 272)
Name: NF18684_low_29
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4419442 - 4419720
Alignment:
| Q |
1 |
aatacaatgtacaaatacaaatacatgcaatatatattccttacactaacctcatcaatattttgtcaaagaaaaaccttcagaaatttctccttacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4419442 |
aatacaatgtacaaatacaaatacatgcaatatatattccttacactaacctcatcaatattttgtcaaagaaaaaccttcagaaatttctccttacaca |
4419541 |
T |
|
| Q |
101 |
tctcataaaattattattaatttctccttcatccttactcgttatcttagattgctaccatctctaaacaagttttataagtcatcacatgatgatg--- |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4419542 |
tctcataaaattattattaatttctccttcatccttactcgttatcttagattgctaccatctctaaaaaagttttataagtcatcacatgatgatgata |
4419641 |
T |
|
| Q |
198 |
------------------gtaataataattaagagctagcatttgtaaccgtatgcaacggtatatggcagcagtttgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4419642 |
ataacaataataataataataataataattaagagctagcatttgtaaccgtatgcaacagtatatggcagcagtttgt |
4419720 |
T |
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