View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_3 (Length: 695)
Name: NF18684_low_3
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 286 - 679
Target Start/End: Complemental strand, 8841819 - 8841426
Alignment:
| Q |
286 |
ctgattatatgatatgtactggtgtatggatcatatacaaccattggtgaggtgtaactgaatgttgattagttgaagttattatcgccttcttccaata |
385 |
Q |
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| T |
8841819 |
ctgattatatgatatgtactggtgtatggatcatatacaaccattggtgaggtgtaactgaatgttgattagttgaagttattatcgccttcttccaata |
8841720 |
T |
|
| Q |
386 |
gaatgatgaggctttccatcaaataactcatcaatgtaagtctctatatcctcaggttgatactttatatacttctctacctgccttccagaatctaaat |
485 |
Q |
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| T |
8841719 |
gaatgatgaggctttccatcaaataactcatcaatgtaagtctctatatcctcaggttgatactttatatacttctctacctgccttccagaatctaaat |
8841620 |
T |
|
| Q |
486 |
tctgtgtaaacctcccaacaaatgccctatacgcaggaatcaccaccccgcataccgaaacacgaagctctgattgaagctgctcatccttcacaaccca |
585 |
Q |
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| T |
8841619 |
tctgtgtaaacctcccaacaaatgccctatacgcaggaatcaccaccccgcataccgaaacacgaagctctgattgaagctgctcatccttcacaaccca |
8841520 |
T |
|
| Q |
586 |
agagctttgtgtcctatgaatatcatcaaacattgtattgaagctcttgaacctctctttcagcactggcttttgaaccttcccattcacactc |
679 |
Q |
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| T |
8841519 |
agagctttgtgtcctatgaatatcatcaaacattgtattgaagctcttgaacctctctttcagcactggcttttgaaccttcccattcacactc |
8841426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 8842100 - 8841847
Alignment:
| Q |
8 |
gtgagatgaacaaaaacagtact-gagtcaaggaaaaaattacattacattgatcaaaagtatgaaaaaattacacaggctcaagagaggcccttggcag |
106 |
Q |
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| T |
8842100 |
gtgatatgaacaaaaacagtacttgagtcaagggaaaaattacattacattgatcaaaagtatgaaaaaattacacaggctcaagagaggcccttggcag |
8842001 |
T |
|
| Q |
107 |
aaacactaaagtgaattatatcctgcttacaaacaaaaccgaacgcttaacgataagaaattttcatgaaaccaacttcttctaacagtaacagaatcat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
8842000 |
aaacactaaagtgaattatatcctgcttacaaacaaaaccgaacgcttaacgataagaaattttcatgagaccaacttcttctaacagtaacagaaccat |
8841901 |
T |
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| Q |
207 |
gaagcatcatttcaacatgtaaatgtgtacacattcatactgtaacatatatat |
260 |
Q |
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| T |
8841900 |
gaagcatcatttcaacatgtaaatgtgtacacattcatactgtaacatatatat |
8841847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 401 - 669
Target Start/End: Original strand, 10625182 - 10625450
Alignment:
| Q |
401 |
ccatcaaataactcatcaatgtaagtctctatatcctcaggttgatactttatatacttctctacctgccttccagaatctaaattctgtgtaaacctcc |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| || || || | ||| |||| |||| |||||||| |
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| T |
10625182 |
ccatcaaataactcatcaatgtaagtctctatatcttcagcttgaaacttaatatacttctctgtttgtctacctggatccaaatattgtgaaaacctcc |
10625281 |
T |
|
| Q |
501 |
caacaaatgccctatacgcaggaatcaccaccccgcataccgaaacacgaagctctgattgaagctgctcatccttcacaacccaagagctttgtgtcct |
600 |
Q |
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| | ||||| ||||| ||||||||||| | ||| ||||| | ||||| |||| ||| || ||||| | || |||||||| |||||||||| | |
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| T |
10625282 |
ccaaaaatgatctataagcaggaatcacaagagatgatattgaaactcttagctcagatttaagttgttcatcatgcataacccaagtgctttgtgtctt |
10625381 |
T |
|
| Q |
601 |
atgaatatcatcaaacattgtattgaagctcttgaacctctctttcagcactggcttttgaaccttccc |
669 |
Q |
| |
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||| || |||||||||| ||||||||| |||||||||| || |||| |||||||| |||||||||| |
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| T |
10625382 |
atgtatctcatcaaacaatgtattgaaagtcttgaacctttccttcaatgctggctttggaaccttccc |
10625450 |
T |
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