View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_32 (Length: 250)
Name: NF18684_low_32
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 25751530 - 25751679
Alignment:
| Q |
10 |
ataattctaaataaaatatacaataaacagtgaagaagtttagttaaagaaaattcgtcataaaagagctttgctaaatataaaatatcaactgaattga |
109 |
Q |
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| T |
25751530 |
ataattctaaataaaatatacaataaaccgtgaagaagtttagttaaagaaaattcgtcataaaagagctttgctaaatataaaatatcaactgaattga |
25751629 |
T |
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| Q |
110 |
taaagcacgtttatcattttagagacgaaagtaatataaatttctgttta |
159 |
Q |
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| T |
25751630 |
taaagcacgtttatcattttagagacgaaagtaatataaatttctgttta |
25751679 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 27536889 - 27536943
Alignment:
| Q |
91 |
aaaatatcaactgaattgataaagcacgtttatcattttagagacgaaagtaata |
145 |
Q |
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| T |
27536889 |
aaaatgtcaattgaatttataaaacacatttatcattttagagatgaaagtaata |
27536943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 2458910 - 2458845
Alignment:
| Q |
79 |
tttgctaaatataaaatatcaactgaattgataaagcacgtttatcattttagagacgaaagtaat |
144 |
Q |
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| T |
2458910 |
tttgttaaatacaaaatattaattgaattcataaaacacttttatcattttagagatgaaattaat |
2458845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 7157002 - 7156942
Alignment:
| Q |
84 |
taaatataaaatatcaactgaattgataaagcacgtttatcattttagagacgaaagtaat |
144 |
Q |
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| T |
7157002 |
taaatacaaaatattaattgaattcataaaacacatttatcattttagagatgaaattaat |
7156942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 6125307 - 6125367
Alignment:
| Q |
84 |
taaatataaaatatcaactgaattgataaagcacgtttatcattttagagacgaaagtaat |
144 |
Q |
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|||||| ||||||| || |||||| ||||| ||| |||||||||||||||| |||| |||| |
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| T |
6125307 |
taaatacaaaatattaattgaattcataaaacacatttatcattttagagatgaaattaat |
6125367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 25998705 - 25998645
Alignment:
| Q |
84 |
taaatataaaatatcaactgaattgataaagcacgtttatcattttagagacgaaagtaat |
144 |
Q |
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|||||| ||||||| || |||||| ||||| ||| |||||||||||||||| |||| |||| |
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| T |
25998705 |
taaatacaaaatattaattgaattcataaaacacatttatcattttagagatgaaattaat |
25998645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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