View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_34 (Length: 249)
Name: NF18684_low_34
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_34 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 45303005 - 45303236
Alignment:
| Q |
18 |
acatcttattcctatttgagatactatgtatcaaaatcaaacccctcacatcaaattccttataaactcttcatttaattcctcctttcctattcttcat |
117 |
Q |
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| T |
45303005 |
acatcttattcctatttgagatactatgtatcaaaatcaaacccctcacatcaaattccttataaactcttcatttaagtcctcctttcctattcttcat |
45303104 |
T |
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| Q |
118 |
atatcaggagcaacatgtgtatacataaacatcaagttacttaaataaggcctataaacaccaaccctttagaatattattatttaaatacttgaaccaa |
217 |
Q |
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| T |
45303105 |
atatcaggagcaacatgtgtatacataagcatcaagttacttaaataaggcctataaacaccaaccctttagaatattattatttaaatacttgaaccaa |
45303204 |
T |
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| Q |
218 |
catagtccaaatgcattttaaggaaaatactt |
249 |
Q |
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| T |
45303205 |
catagtccaaatgcattttaaggaaaatactt |
45303236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 45149889 - 45149949
Alignment:
| Q |
118 |
atatcaggagcaacatgtgtatacataaacatcaagttacttaaataaggcctataaacac |
178 |
Q |
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| T |
45149889 |
atattaggagcaacatgtgtatgcataaacatcaagttacttaagtaaggcctataaacac |
45149949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 45149990 - 45150025
Alignment:
| Q |
212 |
aaccaacatagtccaaatgcattttaaggaaaatac |
247 |
Q |
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| T |
45149990 |
aaccaagatagtccaaatgcattttaaggaaaatac |
45150025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 24136561 - 24136509
Alignment:
| Q |
118 |
atatcaggagcaacatgtgtatacataaacatcaagttacttaaataaggcct |
170 |
Q |
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| T |
24136561 |
atatcaggagcatcatgtgtttacataaacatcaagttacttaagtaaggcct |
24136509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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