View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_5 (Length: 564)
Name: NF18684_low_5
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 12839380 - 12839072
Alignment:
| Q |
21 |
acgggtattgaactactccctccatctcaaattatatgccgctttaccataagtggattacgtattgttgagttttggagtgcatttaagttactattaa |
120 |
Q |
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| T |
12839380 |
acgggtattgaactactccctccatctcaaattatatgtcgctttaccataagtggattacgtattgttgagttttggagtgcatttaagttactattaa |
12839281 |
T |
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| Q |
121 |
aagaaaattctcatgaattttgttttaatacaagatatatattttttcttaggaaagaaaattaatgcactacattgaaaaccaaacaagaaatacaata |
220 |
Q |
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| T |
12839280 |
aagaaaattctcatgaattttgttttaatacaagatatatattttttcttaggaaagaaaattaatgcactacattgaaaaccaaacaagaaatacaata |
12839181 |
T |
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| Q |
221 |
tgaaacttgataaaatatttgtgttcttgtcaatgacaagttcactcgtgcaatgaaataagcaaacacaatcctcttgtgaaaagattatgtcttgtga |
320 |
Q |
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| T |
12839180 |
tgaaacttgataaaatatttgtgtt-ttgtcaatgacaagttcactcgtgtaatgaaataagcaaacacaatcctcttgtgaaaagattatgtcttgtga |
12839082 |
T |
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| Q |
321 |
ctataagata |
330 |
Q |
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| T |
12839081 |
ctataagata |
12839072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 353 - 458
Target Start/End: Complemental strand, 12839014 - 12838909
Alignment:
| Q |
353 |
tagatatgcccttatattacgaaggataaatgtttgtctaatatcacaatgaataagaataatctctagttatttgatcttttgttagggcttatagtgt |
452 |
Q |
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| T |
12839014 |
tagatatgcccttatattacgaaggataaatgtttgtctaatatcacaatgaataagaataatctttagttatttgatcttttgttagggcttatagtgt |
12838915 |
T |
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| Q |
453 |
atttcc |
458 |
Q |
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| T |
12838914 |
atttcc |
12838909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 494 - 564
Target Start/End: Complemental strand, 12838583 - 12838513
Alignment:
| Q |
494 |
ggtagtgatgaggtgaattgattgaatatcaagtaacaaggtttgtctagatcgttaaaaaggtgcgttag |
564 |
Q |
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| T |
12838583 |
ggtagtgatgaggtgaattgtttgaatatcaagtaacaaggtttgtctagatcgttaaaaaggtgccttag |
12838513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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