View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_6 (Length: 554)
Name: NF18684_low_6
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 84 - 539
Target Start/End: Complemental strand, 505913 - 505472
Alignment:
| Q |
84 |
ccataaagccaagtctatttatttatttttaagcacccttcactcattgtgtactcccaacaagtcctaatcaaactctctagtttacttacaatggaga |
183 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
505913 |
ccataaagccaagtctatttattt----ttaagcacccttcactcattgtgtactcccaacaagtcataatcaaactctctagtttac----aatggaga |
505822 |
T |
|
| Q |
184 |
aacatatcaacatggaaagtgatgctgatgacacttctagcacaccctctttctcctcctccacttcatcatcatcaaattcagatacaaaggaggagag |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
505821 |
aacatatcaacatggaaagtgatgctgatgacacttctagcacaccctctttctcctcctccacttcatca------aattcagatacaaaggaggagag |
505728 |
T |
|
| Q |
284 |
taagaaaaggcagagaagtactgaagttgaaaataatagcacacatccaacttatagaggagtaaggaagagaaattgggggaaatttgtgtgtgagatt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505727 |
taagaaaaggcagagaagtactgaagttgaaaataatagcacacatccaacttatagaggagtaaggaagagaaattgggggaaatttgtgtgtgagatt |
505628 |
T |
|
| Q |
384 |
cgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtc |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505627 |
cgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtc |
505528 |
T |
|
| Q |
484 |
attcagcataccttaatttccctgaattggtacaacaacttccaaagccaataagt |
539 |
Q |
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| T |
505527 |
attcagcataccttaatttccctgaattggtacaacaacttccaaagccaataagt |
505472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 470
Target Start/End: Original strand, 4268690 - 4268764
Alignment:
| Q |
396 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgcttta |
470 |
Q |
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| T |
4268690 |
aaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatgtagcagcttta |
4268764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 506313 - 506282
Alignment:
| Q |
14 |
aggtaagtaatggttatctatgtagaatttaa |
45 |
Q |
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| T |
506313 |
aggtaagtaatggttatctatgtagaatttaa |
506282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 381 - 506
Target Start/End: Complemental strand, 16357905 - 16357780
Alignment:
| Q |
381 |
attcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagg |
480 |
Q |
| |
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||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
16357905 |
attcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagg |
16357806 |
T |
|
| Q |
481 |
gtcattcagcataccttaatttccct |
506 |
Q |
| |
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|||||||||| ||||| ||||||||| |
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| T |
16357805 |
gtcattcagcttacctcaatttccct |
16357780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 491
Target Start/End: Complemental strand, 43561880 - 43561785
Alignment:
| Q |
396 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtcattcagca |
491 |
Q |
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||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
43561880 |
aaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagca |
43561785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 393 - 465
Target Start/End: Complemental strand, 36077816 - 36077744
Alignment:
| Q |
393 |
aagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctg |
465 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
36077816 |
aagaagaaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 18735992 - 18735953
Alignment:
| Q |
336 |
tatagaggagtaaggaagagaaattgggggaaatttgtgt |
375 |
Q |
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| T |
18735992 |
tatagaggagtaaggaagagaaagtgggggaaatatgtgt |
18735953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 467
Target Start/End: Original strand, 51237911 - 51238023
Alignment:
| Q |
355 |
gaaattgggggaaatttgtgtgtgagattcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcaca |
454 |
Q |
| |
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|||||||||| |||| |||| || ||||||||||| ||||||||||| |||||||||| || |||| || ||| | |||||||||||| ||||||| |
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| T |
51237911 |
gaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcaca |
51238010 |
T |
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| Q |
455 |
tgatgtagctgct |
467 |
Q |
| |
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|||||||||||| |
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| T |
51238011 |
cgatgtagctgct |
51238023 |
T |
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