View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_8 (Length: 464)
Name: NF18684_low_8
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 44065979 - 44066249
Alignment:
| Q |
9 |
caagaaaattaatcaagtgattgaactcaagtgactaatgagttcgcccaagatgaatcattcaaaaagaaccgagttcaatttctgatgaaataattat |
108 |
Q |
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| T |
44065979 |
caagaatattaaccaagtgattgaactcaagtgactaatgagttcgtccaagatgaatcattcaagaggaaccgagttcaatttctgatgaaataattat |
44066078 |
T |
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| Q |
109 |
tggtcagactttaatatattcgttgatattattattttacacatattgtgttgcagatgtgataaattaatcacacactcaagaggagttgcaaaattta |
208 |
Q |
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| T |
44066079 |
tgatcaaactttaatatattcgttgatattattattttacacatattgtgatgcagatgtgataaattaatcacacactcaagaggagttgcaaaattta |
44066178 |
T |
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| Q |
209 |
gtgaatcaaaaatctgcatgataaatgaaattttttattcatttttccaatccagcctgcctcggctcgtt |
279 |
Q |
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| T |
44066179 |
gtgaatcaaaaatctgcatgataaatgagattttttattcatttttccaatccagcctgcctcggctcgtt |
44066249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 323 - 451
Target Start/End: Original strand, 44066267 - 44066398
Alignment:
| Q |
323 |
gtttatctcaaaaaatagttaagataatcttataatttgaaaaggacaattaagaac--agaggtagggatgaaaac-aaacaagaagtactgttagttt |
419 |
Q |
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| T |
44066267 |
gtttatctcaaaaaatagttaagataatcttataatttgaaaaggacaattaagaacagagaggtagggatgaaaacaaaacaagaagtactgttagttt |
44066366 |
T |
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| Q |
420 |
cctacgaatgaatgaattgctatgccattagt |
451 |
Q |
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| T |
44066367 |
cctacgaatgaatgaattgctatgccattagt |
44066398 |
T |
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