View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18684_low_9 (Length: 461)
Name: NF18684_low_9
Description: NF18684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18684_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Original strand, 7476153 - 7476588
Alignment:
| Q |
11 |
attctagaagcaagcatgacacagttttaatatataatgatttgtggtgcattttgtagggagtaatattgaatatattagggtaccggtcgagttgtct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7476153 |
attctagaagcaagcatgacacagttttaatatataatgatttgtggtgcattttgtagggagtaatattgaatatattagggtaccggtcgagttgtct |
7476252 |
T |
|
| Q |
111 |
tatgttgggtctccatcaactttagcattgcatgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7476253 |
tatgttgggtctccatcaactttagcattgcatgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcct |
7476352 |
T |
|
| Q |
211 |
ctctaaattttgaagtaagaccgtactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtg |
310 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7476353 |
ctctaaattttgaagtatgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtg |
7476452 |
T |
|
| Q |
311 |
gaaagttgatgcaaagatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatctgctaatgaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7476453 |
gaaagttgatgcaaagatagatctgaataacataattcctttcggtacataccatatttatgaattcatcaaaaagttctgagctgatctgctaatgaaa |
7476552 |
T |
|
| Q |
411 |
taatcttgctgctaagtctaattcctggttcttagt |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7476553 |
taatcttgctgctaagtctaattcctggttcttagt |
7476588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Original strand, 7492839 - 7493278
Alignment:
| Q |
11 |
attctagaagcaagcatgacacagttttaatatataatgattt-----gtggtgcattttgtagggagtaatattgaatatattagggtaccggtcgagt |
105 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
7492839 |
attctggaagcaagcatga-acagttttaatatataatgatttaatttgtggtgcattttgtagggagtaatattgaatatattagggtaccggtcaagt |
7492937 |
T |
|
| Q |
106 |
tgtcttatgttgggtctccatcaactttagcattgcatgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatca |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7492938 |
tgtcttatgttgggtctccatcaactttagcattggatgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtacca |
7493037 |
T |
|
| Q |
206 |
ttcctctctaaattttgaagtaagaccgtactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaag |
305 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7493038 |
ttcctctctaaattttgaagtacgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaag |
7493137 |
T |
|
| Q |
306 |
aagtggaaagttgatgcaaagatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatctgctaa |
405 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
7493138 |
aagtggaaagttgatgtaacgatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatctgcaaa |
7493237 |
T |
|
| Q |
406 |
tgaaataatcttgctgctaagtctaattcctggttcttagt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7493238 |
tgaaataatcttgctgctaagtctaattcctggttcttagt |
7493278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 46531286 - 46531086
Alignment:
| Q |
11 |
attctagaagcaagcatgacacagttttaatatataatgatttgtggtgcattttgt-agggagtaatattgaatat--attagggtaccggtcgagttg |
107 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| | ||| ||| ||||||||||| |||||||||| |||| ||| | || | || ||| |||| |
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|
| T |
46531286 |
attctagaagcaagcatgactcagttt-aatatagattgacatgttgtgcattttgttagggagtaattttgattattgaatatgttag-ggtgaagttc |
46531189 |
T |
|
| Q |
108 |
tcttatgttgggtctccatcaactttagcattgcatgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcatt |
207 |
Q |
| |
|
|||||| |||||||| |||||||||||| || | ||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||| ||||||| |
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|
| T |
46531188 |
tcttattttgggtctgcatcaactttagaatagtatgacatcataatggtcatgaatgaagaaattaatctgttttcctttcttttagctacatatcatt |
46531089 |
T |
|
| Q |
208 |
cct |
210 |
Q |
| |
|
||| |
|
|
| T |
46531088 |
cct |
46531086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 46522611 - 46522528
Alignment:
| Q |
363 |
cacatttatgaattcatcaaaaagttctgagctgatctgctaatgaaataatcttgctgctaagtctaattcctggttcttagt |
446 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| ||||| |||| |||||||||| |
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|
| T |
46522611 |
cacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttcccggttcttagt |
46522528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 46530044 - 46529961
Alignment:
| Q |
363 |
cacatttatgaattcatcaaaaagttctgagctgatctgctaatgaaataatcttgctgctaagtctaattcctggttcttagt |
446 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| ||||| |||| |||||||||| |
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|
| T |
46530044 |
cacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttccgggttcttagt |
46529961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 46523535 - 46523429
Alignment:
| Q |
241 |
aatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtggaaagttgatgcaaagatagatctgaataa |
340 |
Q |
| |
|
||||||| || |||| ||||||||||||||| ||||||| || | | |||||||||| ||||| |||||||||||||| || || ||||||||||||||| |
|
|
| T |
46523535 |
aatgaatcgtctcgtgaagctccaatataatgttttgaaacaaagttctttgtttgtctaaaatgaagtggaaagttgctgtaatgatagatctgaataa |
46523436 |
T |
|
| Q |
341 |
cataatt |
347 |
Q |
| |
|
||||||| |
|
|
| T |
46523435 |
cataatt |
46523429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 46523606 - 46523533
Alignment:
| Q |
103 |
agttgtcttatgttgggtctccatcaactttagcattgcatgacatcataatggacatgaatgaagaagttaat |
176 |
Q |
| |
|
|||| |||||| |||| ||| |||||||||||| |||| ||||||||||||||| |||||||| |||||||||| |
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|
| T |
46523606 |
agttctcttattttggatctgcatcaactttagaattgtatgacatcataatggtcatgaatgtagaagttaat |
46523533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 430
Target Start/End: Original strand, 46324378 - 46324445
Alignment:
| Q |
363 |
cacatttatgaattcatcaaaaagttctgagctgatctgctaatgaaataatcttgctgctaagtcta |
430 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| | ||||||||| ||| |||||||||| |
|
|
| T |
46324378 |
cacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtcta |
46324445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 46519269 - 46519220
Alignment:
| Q |
363 |
cacatttatgaattcatcaaaaagttctgagctgatctgctaatgaaata |
412 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
46519269 |
cacatttacgaattcatcaagaaattctgagctgatctgcaaatgaaata |
46519220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 46327833 - 46327911
Alignment:
| Q |
142 |
atgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcctctctaaattttg |
222 |
Q |
| |
|
|||| |||||||||| || ||| ||||||||| |||||||||| |||||||||| |||||| | |||||||||| |||| |
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|
| T |
46327833 |
atgatatcataatgggtataaattaagaagttagtctattttcctttcttttagc--tgtatcttccctctctaaaatttg |
46327911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 46531084 - 46531028
Alignment:
| Q |
223 |
aagtaagaccgtactcaaaatgaatggtatcgtaaagctccaatataatattttgaa |
279 |
Q |
| |
|
||||| |||| |||||| | ||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
46531084 |
aagtatgaccctactcagattgaatcgtatcgtgaagctacaatataatattttgaa |
46531028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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