View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18685_low_10 (Length: 205)
Name: NF18685_low_10
Description: NF18685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18685_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 10819654 - 10819490
Alignment:
| Q |
19 |
attataacattttttcaaagaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcat |
118 |
Q |
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| T |
10819654 |
attataacattttttcaaagaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcat |
10819555 |
T |
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| Q |
119 |
attttaaaattcttttttagcttcccgttttcaatttcaaccctatcaaatacactcctcccgtc |
183 |
Q |
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| T |
10819554 |
attttaaaattcttttttagcttcccgttttcaatttcaaccctatcaaatacactcctcccgtc |
10819490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 1607605 - 1607734
Alignment:
| Q |
23 |
taacattttttcaaagaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattt |
122 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||| |||||||||||| ||||| |
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| T |
1607605 |
taacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattt |
1607704 |
T |
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| Q |
123 |
taaaattcttttttagcttcccgttttcaa |
152 |
Q |
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| T |
1607705 |
taaaattcatttttatcttcccattttcaa |
1607734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 1630598 - 1630727
Alignment:
| Q |
23 |
taacattttttcaaagaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattt |
122 |
Q |
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| T |
1630598 |
taacattttttttaggaaaaaattaaaacattatatacctaaaatattgaatatacttgaacatctacacattataattgctctttgtgtcttcttattt |
1630697 |
T |
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| Q |
123 |
taaaattcttttttagcttcccgttttcaa |
152 |
Q |
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| T |
1630698 |
taaaattcatttttatcttcccattttcaa |
1630727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 1624615 - 1624727
Alignment:
| Q |
23 |
taacattttttcaaagaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattt |
122 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||| || ||||||||| ||||| |
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| T |
1624615 |
taacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattg--ctctgtgtcttcttattt |
1624712 |
T |
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| Q |
123 |
taaaattctttttta |
137 |
Q |
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|||||||| |||||| |
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| T |
1624713 |
taaaattcattttta |
1624727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 1602996 - 1603084
Alignment:
| Q |
45 |
ttaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
137 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattg----ctgtgtcttcatattttaaaattatttttta |
1603084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 8416860 - 8416788
Alignment:
| Q |
53 |
ttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaa |
125 |
Q |
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||||||| | |||| |||||| | |||||| ||||| |||||||||| | ||| |||||||||||||||||| |
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| T |
8416860 |
ttatatagccaaaacattgaaaacacttcaacatctgcaaattataactactctatgtgtcttcatattttaa |
8416788 |
T |
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