View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18685_low_2 (Length: 505)
Name: NF18685_low_2
Description: NF18685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18685_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 133 - 486
Target Start/End: Original strand, 41256481 - 41256832
Alignment:
| Q |
133 |
tatgtaagttgttttttctcggcgatgtaaagaaaattcacataattaactcgtgtcattatgatgagtaaatttttatagaaaaacttaaagacgcttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41256481 |
tatgtaagttgttttttctcggcgatgtaaagaaaattcacataattaactcgtgtcattatgatgagtaaatttttatagaaaaacttaaagacgcttg |
41256580 |
T |
|
| Q |
233 |
attattacaattactggtaattgtttgattgttacgaacgcatgcgtttaaagcatgaggtatgagttatttaggttggtaaaagtaaaactaaaacaac |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41256581 |
attattataattactggtaattgtttgattgttacgtacgcatgcgtttaaagcatgaggtatgagttatttaggttggtaaaagtaaaactaaaacaac |
41256680 |
T |
|
| Q |
333 |
agagaaatagacacaatcacatatagcatgtgacaagctataatgattcatgaaactgccgtttgaattaggcaaggcgttcaatacttatatttattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41256681 |
agagaaatagacacaatcacatatagcatgtgacaagctataatgattcatgaaactgccgtttgaattaggcaaggcgttcaatact--tatttattat |
41256778 |
T |
|
| Q |
433 |
tatgagcatttgctgttggagggaaacatgtccacgggtttatcaattgaaagc |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41256779 |
tatgagcatttgctgttggagggaaacatgtccacgggtttatcaattgaaagc |
41256832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 41256074 - 41256199
Alignment:
| Q |
9 |
gattatactttatattatgacttgatgtatgtttagtatcgtcgtagatttataaatatcatgacgactcgtgcgattctaacaaatctaaagtaatgtc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41256074 |
gattatactttatattatgacttgatgtatgtttggtatcgtcgtagatttataaatatcatgacgactcgtgcgattctaacaaatttaaagtaatgtc |
41256173 |
T |
|
| Q |
109 |
aaacatgaaattaaacaaactttata |
134 |
Q |
| |
|
||| |||||||||||||||| ||||| |
|
|
| T |
41256174 |
aaatatgaaattaaacaaacattata |
41256199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University