View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18685_low_6 (Length: 338)
Name: NF18685_low_6
Description: NF18685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18685_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 5398943 - 5398740
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
5398943 |
tatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacaactataacataatgacacaatgaatt |
5398845 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5398844 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
5398745 |
T |
|
| Q |
203 |
taaca |
207 |
Q |
| |
|
||||| |
|
|
| T |
5398744 |
taaca |
5398740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 5403377 - 5403174
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
5403377 |
tatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacaactataacataatgacacaatgaatt |
5403279 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5403278 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
5403179 |
T |
|
| Q |
203 |
taaca |
207 |
Q |
| |
|
||||| |
|
|
| T |
5403178 |
taaca |
5403174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 4918123 - 4918235
Alignment:
| Q |
208 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4918123 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
4918222 |
T |
|
| Q |
308 |
ctttctctcagca |
320 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4918223 |
ctttctctcagca |
4918235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 39728989 - 39728796
Alignment:
| Q |
13 |
catgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaata |
112 |
Q |
| |
|
|||||| |||||||||| |||||| |||||| |||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||| |||| |
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|
| T |
39728989 |
catgtaataataatgaaataatgataaattaagattgacgttgttgac-ttattctaagctacagctataacataatgacacaatgaattgaaataaata |
39728891 |
T |
|
| Q |
113 |
tttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
207 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| |||| |||||||||||||| |
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|
| T |
39728890 |
tttgtaatttgatgcaataaactactgatatggaaattgatgtgttgactttaaaatggatgtatctagagacatatgtaaattaatgtctaaca |
39728796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 4929981 - 4930093
Alignment:
| Q |
208 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4929981 |
aaactttgatggcataagtttcaatcacatcctcaacatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
4930080 |
T |
|
| Q |
308 |
ctttctctcagca |
320 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4930081 |
ctttctctcagca |
4930093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 4887337 - 4887233
Alignment:
| Q |
215 |
gatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctgctttctc |
314 |
Q |
| |
|
|||||||||| | ||||||| |||||| |||| |||| || |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4887337 |
gatggcataattctcaatcagatcctcgacatcgtaagctagttttctaatttctgatatcaaattctttatagtctcaccaccttcatcctgctttcta |
4887238 |
T |
|
| Q |
315 |
tcagc |
319 |
Q |
| |
|
||||| |
|
|
| T |
4887237 |
tcagc |
4887233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 3539941 - 3539737
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3539941 |
tatatacaaccatataataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacaactataacataatgacacaatgaatt |
3539843 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3539842 |
caaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
3539743 |
T |
|
| Q |
203 |
taacaa |
208 |
Q |
| |
|
|||||| |
|
|
| T |
3539742 |
taacaa |
3539737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 3544364 - 3544161
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3544364 |
tatatacaaccatataataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacaactataacataatgacacaatgaatt |
3544266 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3544265 |
caaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
3544166 |
T |
|
| Q |
203 |
taaca |
207 |
Q |
| |
|
||||| |
|
|
| T |
3544165 |
taaca |
3544161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 34695400 - 34695603
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
34695400 |
tatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacatctataacataatgacacaatgaatt |
34695498 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34695499 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgttgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
34695598 |
T |
|
| Q |
203 |
taaca |
207 |
Q |
| |
|
||||| |
|
|
| T |
34695599 |
taaca |
34695603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 6516952 - 6517155
Alignment:
| Q |
3 |
tatatacaaccatgtattaataatgaactaatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaatt |
102 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
6516952 |
tatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttgttgac-ttattctaagctacagctataacataatgacacaatgaatt |
6517050 |
T |
|
| Q |
103 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6517051 |
gaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattggtgtgttgactttgaaattgatgcatctagaaacagctgtacattaatgtc |
6517150 |
T |
|
| Q |
203 |
taaca |
207 |
Q |
| |
|
||||| |
|
|
| T |
6517151 |
taaca |
6517155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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