View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18685_low_9 (Length: 260)
Name: NF18685_low_9
Description: NF18685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18685_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 38576824 - 38577061
Alignment:
| Q |
16 |
attttgtggtgaactttaatcttgcttatatgtaaccttttatgtagtccaactgagaatgaaacatcaattgttatcagtttagcc-----tagaatcc |
110 |
Q |
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| T |
38576824 |
attttgtggtgaactttaatcttgcttatatgtaaccttttatgtagtccaactcagaatgaaacatcaattgttatcaatttaacctaaaatagaatcc |
38576923 |
T |
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| Q |
111 |
aataaaaaattaattaatttcttggttctaaaataactgacatatttttctnnnnnnntataccatagtgaccggtccattttaatttttaatataatat |
210 |
Q |
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| T |
38576924 |
aataaaaaattaattaatttctcggtcctaaaataactgacatatttttaaaaaaatatataccatagtgaccggtccattttaatttttaatataatat |
38577023 |
T |
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| Q |
211 |
tacttattatttttcaactgttcaatctaattaatatt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38577024 |
tacttattatttttcaactgttcaatctaattaatatt |
38577061 |
T |
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