View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_high_22 (Length: 249)
Name: NF18686_high_22
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_high_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 5969268 - 5969120
Alignment:
| Q |
101 |
gcactatagattgtcccaaaactgtaacgcaggctaatagtcaaagttaggcatgtgatttctaatatgtgatatacagacaagtgtgtgtcagataagg |
200 |
Q |
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| T |
5969268 |
gcactatagattgtcccaaaactgtaacgcaggctaatagtcaaagttaggcatgtgatttctaatatgtgatatacagacaagtgtgtgtcagataagg |
5969169 |
T |
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| Q |
201 |
ttatcttaaaggacattagagtataaatgtaaaatgtatggtttctggc |
249 |
Q |
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| T |
5969168 |
ttatcttaaaggacattagagtataaatgtaaaatgtatggattctggc |
5969120 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5969318 - 5969266
Alignment:
| Q |
18 |
ggtctcacccattttcctacgctaaaattaaaatttcttaggcttccatggca |
70 |
Q |
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| T |
5969318 |
ggtctcacccattttcctaccctaaaattaaaatttcttaggcttccatggca |
5969266 |
T |
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