View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_high_4 (Length: 521)
Name: NF18686_high_4
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 3 - 521
Target Start/End: Complemental strand, 54221525 - 54221000
Alignment:
| Q |
3 |
catagggtacaaattcttaagttaaattatcaagctcttcataagaatcaactcaagctcaactcttcatgtagatgccaattgcaaaagttcaatattt |
102 |
Q |
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| T |
54221525 |
catagggtacaaattcttaagttaaattatccagctcttcataagaatcaactcaaactcatctcttcatgtagatgccaattgcaaaagttcaatattt |
54221426 |
T |
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| Q |
103 |
agttcaaatgtagctccaggctgtaacaacataaacaaagttcaagaaccgcatggtgtaggtttgtcattttcgttgaagagaacaatatttttcctac |
202 |
Q |
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| T |
54221425 |
agttcaaatgtagctccaggctgtaacaacataaacaaagttcaagaaccgcatggtgtaggtttgtcattttcgttgaagagaacaatatttttcctac |
54221326 |
T |
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| Q |
203 |
atattattgtccataacctatatctaatcaacaatgagtaaaaagtgaaatgtacaaataaaatagtggaggtgagcataacagagtggcaaaacaactt |
302 |
Q |
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| T |
54221325 |
atattattgtccataacctatatctaatcaacaatgagtaaaaagtgaaatgtacaaataaaatagtggaggtgagcataacagagtggcaaaacaactt |
54221226 |
T |
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| Q |
303 |
tcataacaacgcttaaggcacttgtcctaagtgtatgtttcaatagatttgctagatg-------caggatcaacaatgaaaagcagaatttaaggaagt |
395 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54221225 |
tcatgacaacgcttaaggcacttgtcctaagtgtatgtttcaatagatttgctagatggggacatcaggatcaacaatgaaaagcagaatttaaggaagt |
54221126 |
T |
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| Q |
396 |
taaattagaatctatgttggaagacatgagatgacgagaacagatctttaccggaatctcattcattcccttttttccataccctttttcaggaggaaca |
495 |
Q |
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| T |
54221125 |
taaattagaatctatgttgaaagacatgagatgacaagaacagatctttaccggaatctcattcattcccttttttccataccctttttcaggaggaaca |
54221026 |
T |
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| Q |
496 |
atcacagttcgctgcaaccatcattc |
521 |
Q |
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| T |
54221025 |
atcacagttcgctgcaaccatcattc |
54221000 |
T |
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