View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18686_high_7 (Length: 441)
Name: NF18686_high_7
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_high_7 |
 |  |
|
| [»] scaffold0590 (1 HSPs) |
 |  |  |
|
| [»] scaffold0275 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 47427833 - 47427447
Alignment:
| Q |
16 |
atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427833 |
atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa |
47427734 |
T |
 |
| Q |
116 |
ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427733 |
ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag |
47427634 |
T |
 |
| Q |
216 |
aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47427633 |
aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct |
47427534 |
T |
 |
| Q |
316 |
aaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacacatgaatgcttttatg |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
47427533 |
aaaatagct--------------------tatatgagaatacttttactttattttgtcttttgttataggattaacttatacacatgaatgcttttatg |
47427454 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 5006558 - 5006637
Alignment:
| Q |
320 |
tagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
|||||||| |||| ||| |||| ||||||||| || | ||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5006558 |
tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttataca |
5006637 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 383
Target Start/End: Original strand, 44151476 - 44151592
Alignment:
| Q |
267 |
tttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttacttt |
366 |
Q |
| |
|
|||||||||| | |||||||||||| || |||||||||| || ||| || |||| |||| |||| || ||||||||||||| || | ||||||||| |
|
|
| T |
44151476 |
tttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttacttt |
44151575 |
T |
 |
| Q |
367 |
attttgtcttttgttat |
383 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
44151576 |
attctatcttttgttat |
44151592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 1403018 - 1402952
Alignment:
| Q |
319 |
atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
1403018 |
atagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatag |
1402952 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 49219206 - 49219082
Alignment:
| Q |
274 |
catctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgt |
373 |
Q |
| |
|
||||| |||||| ||||| || |||||||||| || | | ||| |||| |||| |||| || |||||||||||||| |||| ||| |||||||||| | |
|
|
| T |
49219206 |
catctccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat |
49219107 |
T |
 |
| Q |
374 |
cttttgttataggaatcacttatac |
398 |
Q |
| |
|
||||||||||| ||| |||||||| |
|
|
| T |
49219106 |
attttgttatagaaataacttatac |
49219082 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 30024703 - 30024645
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttat |
396 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
30024703 |
tatagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttat |
30024645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 4071885 - 4071838
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
4071885 |
tatagcttatatgaaaataatttgactttattttatcttttgttatag |
4071838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 45128363 - 45128424
Alignment:
| Q |
324 |
ttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||| ||| | || ||||| ||||||||||||| |
|
|
| T |
45128363 |
ttatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatag |
45128424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 37689429 - 37689497
Alignment:
| Q |
316 |
aaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata |
384 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| |||| ||| |||||| ||| |||||||||||| |
|
|
| T |
37689429 |
aaaatagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttatcttttgttata |
37689497 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 1395673 - 1395613
Alignment:
| Q |
339 |
atagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
1395673 |
atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttataca |
1395613 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 36646344 - 36646496
Alignment:
| Q |
233 |
ttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaa |
332 |
Q |
| |
|
|||| ||||||||||| | | ||| ||||||| ||||| ||| | |||||| ||||| ||||||||||| | ||| | |||| ||||||||| |||| |
|
|
| T |
36646344 |
ttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa |
36646443 |
T |
 |
| Q |
333 |
taatctatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|| |||| ||||||||| || | || ||||||||||| |||||||| |||| |
|
|
| T |
36646444 |
caagttataacttatatgaaaacaattatactttattttatcttttgtcatag |
36646496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 24235731 - 24235813
Alignment:
| Q |
319 |
atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacaca |
401 |
Q |
| |
|
||||||||| |||| || |||||||||||| |||| ||| ||||||| || ||||||||||||| ||| ||||||||||| |
|
|
| T |
24235731 |
atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttatacaca |
24235813 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 29771812 - 29771750
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacac |
400 |
Q |
| |
|
||||| |||||||| |||| ||| |||||| ||||||||||| ||||| ||| |||||||||| |
|
|
| T |
29771812 |
tatagtttatatgaaaataatttcactttactttgtcttttggtatagaaataacttatacac |
29771750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 40122748 - 40122864
Alignment:
| Q |
266 |
gtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactt |
365 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||||||| || ||| || |||||||||||||| || |||||||| ||||| || | ||| |||| |
|
|
| T |
40122748 |
gtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtttgactt |
40122846 |
T |
 |
| Q |
366 |
tattttgtcttttgttat |
383 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
40122847 |
tattttatcttttgttat |
40122864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 1145 - 1202
Alignment:
| Q |
342 |
gcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
1145 |
gcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttataca |
1202 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0275
Description:
Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 2830 - 2773
Alignment:
| Q |
342 |
gcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
2830 |
gcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttataca |
2773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 35135729 - 35135790
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
35135729 |
tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttataca |
35135790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 39128659 - 39128595
Alignment:
| Q |
321 |
agcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|||||||||||||| | ||||| |||| |||||| | ||| |||||||||| ||||||||||||| |
|
|
| T |
39128659 |
agcttataaaaatagtttatagtttatttgagaacaatttgactttattttatcttttgttatag |
39128595 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 33459026 - 33459063
Alignment:
| Q |
362 |
actttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33459026 |
actttattttgtcttttgttatagaaataacttataca |
33459063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 8158353 - 8158409
Alignment:
| Q |
323 |
cttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg |
379 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
8158353 |
cttatgaaaataatttaaagcttatatgaaaataatttaactttattttatcttttg |
8158409 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 18962086 - 18962151
Alignment:
| Q |
319 |
atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata |
384 |
Q |
| |
|
||||||||| |||||| | |||||||||||||| || | ||| |||||||||| |||||||||||| |
|
|
| T |
18962086 |
atagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttata |
18962151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 37292415 - 37292457
Alignment:
| Q |
339 |
atagcttatatgagaatacttttactttattttgtcttttgtt |
381 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
37292415 |
atagcttatatgaaaatagttttactttattttatcttttgtt |
37292457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 17952770 - 17952815
Alignment:
| Q |
340 |
tagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
17952770 |
tagcttatatgaaaatagtttgactttattttatcttttgttatag |
17952815 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 10143194 - 10143114
Alignment:
| Q |
319 |
atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
||||||||| |||| || |||||||||||| | || | ||| |||| ||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
10143194 |
atagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttataca |
10143114 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 31461442 - 31461394
Alignment:
| Q |
337 |
ctatagcttatatgagaatacttttactttattttgtcttttgttatag |
385 |
Q |
| |
|
|||||||||| | ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
31461442 |
ctatagcttacaggagaataatttgactttattttatcttttgttatag |
31461394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 48830123 - 48830204
Alignment:
| Q |
318 |
aatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
|||||||||| |||| | | |||||||||||||| |||| ||| |||||||||| ||||| || |||| ||| ||||||||| |
|
|
| T |
48830123 |
aatagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttataca |
48830204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 49517073 - 49517010
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacaca |
401 |
Q |
| |
|
||||||||| |||| || | ||| |||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
49517073 |
tatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttatacaca |
49517010 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 15360897 - 15360836
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca |
399 |
Q |
| |
|
|||||||||||||| || | ||| |||||||||| ||||||||||||| ||| ||| ||||| |
|
|
| T |
15360897 |
tatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataactaataca |
15360836 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 29007783 - 29007840
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcactta |
395 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| ||| ||||||||||||| ||| ||||| |
|
|
| T |
29007783 |
tatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataactta |
29007840 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 28467376 - 28467420
Alignment:
| Q |
340 |
tagcttatatgagaatacttttactttattttgtcttttgttata |
384 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| |||||||||||| |
|
|
| T |
28467376 |
tagcttatatgaaaataatttgactttattttatcttttgttata |
28467420 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 44936657 - 44936713
Alignment:
| Q |
338 |
tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcactt |
394 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| || ||||||||||||| ||| |||| |
|
|
| T |
44936657 |
tatagcttatatgaaaatagtttgactttatcttatcttttgttatagaaataactt |
44936713 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 28769348 - 28769467
Alignment:
| Q |
280 |
cataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg |
379 |
Q |
| |
|
|||||| ||||| || |||||||||| ||| | || |||||||||||| |||| | ||||||||||| || |||| ||| |||| ||||| | |||| |
|
|
| T |
28769348 |
cataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttatagtttg |
28769447 |
T |
 |
| Q |
380 |
ttataggaatcacttataca |
399 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
28769448 |
ttataggaatagcttataca |
28769467 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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