View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_1 (Length: 840)
Name: NF18686_low_1
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 767; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 20 - 830
Target Start/End: Complemental strand, 184579 - 183769
Alignment:
| Q |
20 |
gcctcatcagcagattctttccctttctcttccttaatgttgtgggtgtaaaccttaaactgtcacttgcaagttccctatattcaggggtgactttgac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184579 |
gcctcatcagcagattctttccctttctcttccttaatgttgtgggtgtaaaccttaaactgtcacttgcaagttccctatattcaggggtgactttgac |
184480 |
T |
|
| Q |
120 |
atcaaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgcacttgcactggccttcttcacatctttcttatgtacacgacctata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
184479 |
atcaaacgtagtcaatatagtagaattctcctggacgttcttttcaagcattgctcttgcactggccttcttcacatctttcttatgtacatgatctata |
184380 |
T |
|
| Q |
220 |
gcgctgacaggaatattcacttctggagttttcttaaaattcaatactcctcctttcaataatgagccaggcattgtagcctgaacataaatgctctcgc |
319 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
184379 |
gcactgacaggaatattaacttctggagttttcttaaaattcattactcctcttttcaataatgagccaggtattgtagcctgaacataaatgctctcgc |
184280 |
T |
|
| Q |
320 |
cactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactaga |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
184279 |
cactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggcttcaccacatataaactaga |
184180 |
T |
|
| Q |
420 |
gccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataat |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
184179 |
gccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataat |
184080 |
T |
|
| Q |
520 |
tcaataaagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctg |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
184079 |
tcaataaagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcgtgtatatacgatccctgaaattagacaaccattacttagctg |
183980 |
T |
|
| Q |
620 |
gaaacacactaaataatagaatacagctcctctgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaa |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183979 |
gaaacacactaaataatagaatacagctcctctgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaa |
183880 |
T |
|
| Q |
720 |
aaatgaagacctctccatcatagtaatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagt |
819 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183879 |
aaatgaagacttctccatcatagtaatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagt |
183780 |
T |
|
| Q |
820 |
catgtcctatg |
830 |
Q |
| |
|
||||||||||| |
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|
| T |
183779 |
catgtcctatg |
183769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 333 - 520
Target Start/End: Original strand, 590090 - 590277
Alignment:
| Q |
333 |
cctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagca |
432 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| ||| ||||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||||| |
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|
| T |
590090 |
cctgctcaagactgactccacatcttccatggccacttgtttaacatattccaaatcatcatcaggcttcaccaaatataaactagcaccagcaatagca |
590189 |
T |
|
| Q |
433 |
tgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaacatagaaccgaagaaaaacataatt |
520 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||| |
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|
| T |
590190 |
tgttcaagtccctgcaataacaggaaatcttatcaaatctctcattctctacacatttctaaacataaaaataaagaaaaacataatt |
590277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 528 - 622
Target Start/End: Original strand, 590320 - 590414
Alignment:
| Q |
528 |
gtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa |
622 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| || ||||||||||||||||||| |
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|
| T |
590320 |
gtacctgggcagtgatcttgacgcccatcacagctttgatttctttgtgatgcataaatgatccctgaaatttgagaaccattacttagctggaa |
590414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 3015000 - 3014935
Alignment:
| Q |
157 |
ttcttttcaagcattgcact----tgcactggccttcttcacatctttcttatgtacacgacctat |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |||||||||| | ||||||| |
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|
| T |
3015000 |
ttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctat |
3014935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 298 - 497
Target Start/End: Complemental strand, 44607446 - 44607247
Alignment:
| Q |
298 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
397 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||| || |
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|
| T |
44607446 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagactgactccacgtcttccaaggctgcttttttaatatatttcaaatcatcattag |
44607347 |
T |
|
| Q |
398 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaaca |
497 |
Q |
| |
|
| |||||||||| |||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
44607346 |
gcttcaccacatgtaaactagcgccagcaacagcgtgttcaagtccctgaaataacaggaaatcttatcaaatctcagattctctacacatttataaaca |
44607247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 298 - 497
Target Start/End: Complemental strand, 44628952 - 44628753
Alignment:
| Q |
298 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
397 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
|
|
| T |
44628952 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagaccgactccacgtcttccaaagctgcttttttaatatattccaaatcatcatcag |
44628853 |
T |
|
| Q |
398 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctgattctctacacattcataaaca |
497 |
Q |
| |
|
| || |||||||||||||||| |||||||||||||||||||| |||| |||| |||||||| ||| ||| |||||||||||||||||| ||||||| |
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|
| T |
44628852 |
gctttaccacatataaactagctccagcaatagcatgttcaagcccctgaaatagaaggaaatcatataaaaaatctgattctctacacatttataaaca |
44628753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 526 - 667
Target Start/End: Complemental strand, 44628693 - 44628551
Alignment:
| Q |
526 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctggaa-ac |
624 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44628693 |
aagtacctgggcagtgatcttgatgcccatagcagctttgatttctttgtgatggatatacgatccctgaaattagacaaccattacttagctggaagac |
44628594 |
T |
|
| Q |
625 |
acactaaataatagaatacagctcctctgtcgaagacccctca |
667 |
Q |
| |
|
| |||||||| | ||||||||||||| ||| ||| ||||||| |
|
|
| T |
44628593 |
atactaaatagcaaaatacagctcctccgtcaaaggcccctca |
44628551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 526 - 621
Target Start/End: Complemental strand, 44607182 - 44607087
Alignment:
| Q |
526 |
aagtacctgggcagtaatcttgattcccatcacagctttgatttctttgtcatgtatatacgatccctgaaattagacaaccattacttagctgga |
621 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
44607182 |
aagtacctgggcagtgatcttgatacccatagcagctttgatttctttgtgatggatatatgatccctgaaattagacaaccattacttagctgga |
44607087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 744 - 815
Target Start/End: Complemental strand, 44607073 - 44607003
Alignment:
| Q |
744 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctca |
815 |
Q |
| |
|
|||||||||||||| |||||||||| | || || | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44607073 |
aatatgaactatgaacaactatact-gctaaaacttggttccttcctgttaagcataatgttaagaatctca |
44607003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 796
Target Start/End: Complemental strand, 44628539 - 44628487
Alignment:
| Q |
744 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaag |
796 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaag |
44628487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 44607761 - 44607703
Alignment:
| Q |
20 |
gcctcatcagcagattctttccctttctcttccttaatgttgtgggtgtaaaccttaaa |
78 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
44607761 |
gcctcatcagcagattctttctttttctcctccttaatgttggccatgtaaaccttaaa |
44607703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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