View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_10 (Length: 422)
Name: NF18686_low_10
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 28 - 403
Target Start/End: Original strand, 47126289 - 47126668
Alignment:
| Q |
28 |
atgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----cttcaatctaaagtgtcggtgatacatagtttattcgataccaa |
123 |
Q |
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| T |
47126289 |
atgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacaccttcaatctaaagtgtcggtgatacatagtttattcgacaccaa |
47126388 |
T |
|
| Q |
124 |
agctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggatatgctgttgggaattcccttaccagtgagtccaccctcccta |
223 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126389 |
agctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggatatgctgttgggaattcccttaccagtgagtccaccctcccta |
47126488 |
T |
|
| Q |
224 |
gaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttctgttcttcaaacttgggtctttgttccttttcatgatattat |
323 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47126489 |
gaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttctgttcttcaaacttgggtccttgttccttttcatgatattat |
47126588 |
T |
|
| Q |
324 |
tctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctact |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126589 |
tctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctact |
47126668 |
T |
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