View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_11 (Length: 416)
Name: NF18686_low_11
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 38876258 - 38876645
Alignment:
| Q |
12 |
atacttcagaaaagcactcacaacttgtgttgaaggttggtatttataatcgccggcttctgaaagtgcggcctctaagtggctcatagcaccatccaat |
111 |
Q |
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| T |
38876258 |
atacttcagaaaagcactcacaacttgtggtgaaggttggtatttataatcgctggcttctgaaagtgcggcctctaagtggctcatagcaccatccaat |
38876357 |
T |
|
| Q |
112 |
tgacctttctccaataaagatgccatgaacatttcccgaatcctaaagaaaggtcctctgcagctcttgagagcttcctcaaagaccaacacagcttcct |
211 |
Q |
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| T |
38876358 |
tgacctttctccaataaagatgccatgaacatttcccgaatcctaaagaaaggtcctctgcagctcttgagagcttcctcaaagaccaacacagcttcct |
38876457 |
T |
|
| Q |
212 |
tgtccatgttttgactcaagtaagcctgcactgcaacaccaaccaacctagaatcataactaacatgcctagattcccactccttaaacaattttattat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38876458 |
tgtccatgttttgactcaagtaagcctgcactgcaacaccaaccaacctagaatcataactaacatgcctagattcccactccttaaacaattttattat |
38876557 |
T |
|
| Q |
312 |
gccctccatatcattaagccttctaaggttagaaagcataataagatagctccgattggtcaccggggtgatcttcttgagggtcccc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38876558 |
gccctccatatcattaagccttctaaggttagaaagcataataagatagctccgattggtcaccggggtgatcttcttgagggtcccc |
38876645 |
T |
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