View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_12 (Length: 400)
Name: NF18686_low_12
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 12814452 - 12814176
Alignment:
| Q |
17 |
agactcgagagcaaatgaatataatactttaactaataagagaaagtgaaaagagaatacacaaaagaaattatcattacaaaaaatatcatattcaaaa |
116 |
Q |
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| T |
12814452 |
agactcaagagcaaatgaatataatactttaactaataagagaaagtcaaaagagaatacacataagaaattatcattacaaaaaatatcatattcaaaa |
12814353 |
T |
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| Q |
117 |
tacttttccaaaatgttagtttctaaaagnnnnnnncatttctactgctaaacacatcatttatatgcaagaaaaactatttccaaaacatcatcttgat |
216 |
Q |
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| T |
12814352 |
tacttttcccaaatgttagtttctaaaagaaaaaaacatttctactgctaaacacatcatttatatgcaagaaaaactatttccaaaacatcatcttgat |
12814253 |
T |
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| Q |
217 |
tcttttcctacagtgttacatatgcaaaataattggtggtatatacttaagagtggaaaacaaagtgatgaagtcata |
294 |
Q |
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| T |
12814252 |
ttttttcctacaatgttacatatgcaaagtaattggtgatatatactt-agagtggaaaacaaagtgatgatgtcata |
12814176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 12814084 - 12813974
Alignment:
| Q |
290 |
tcatatcttgtttgaaatcaattttaggcccagagactacccgtaagtttgagtcatgtgagcagcaatatcaaatcattgacgacaagtatgccatata |
389 |
Q |
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| T |
12814084 |
tcatatcttgtttgaaatcaattttaggtccagagactacccgtaagtttgagtcatgtgagcagcaatatcaaataattgacggtaagtatgccatata |
12813985 |
T |
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| Q |
390 |
aggagtatgaa |
400 |
Q |
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| T |
12813984 |
aggagtatgaa |
12813974 |
T |
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