View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_13 (Length: 397)
Name: NF18686_low_13
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 53956613 - 53956952
Alignment:
| Q |
10 |
attatactattattcaatgaacacagaagctgatcccgtcacctgaattgagtttaattttgtatttccgtataatgatatgaaggcgaatatattttct |
109 |
Q |
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| T |
53956613 |
attataatgttattcaataaacacagaagctgatcccgtcacctgaattgagtttaattttgtatttccgtataatgatatgaaggcgaatatgttttct |
53956712 |
T |
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| Q |
110 |
tttttaaataagcaatgttagtaagtatgatttgttaactctttgtacatcatcttttgggagttttggcctaatcctcttctttgatctctttcttttt |
209 |
Q |
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| T |
53956713 |
tttttaaataagcaatgttagtaagtaagatttgttaactctttgtacatcatcttttgggagttttggcctaatcctctcctttgttctctttcttttt |
53956812 |
T |
|
| Q |
210 |
atatatattttggggtggtttaactctttgctaccaccatttggataaataaaaaagttggtattagattaatatttttctcctcaattcaaatttgaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
53956813 |
atatatattttggggtggtttaactctttgctaccacctttttgataaataaaaaagttggtattagattaatatttttctccttaatttaaatttgaat |
53956912 |
T |
|
| Q |
310 |
ccaagatctcaagctcaattaatctttagttcaaaccagt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
53956913 |
ccaagatctcaagctcaattaatctttagttcaaaccagt |
53956952 |
T |
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