View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18686_low_15 (Length: 345)

Name: NF18686_low_15
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18686_low_15
NF18686_low_15
[»] chr8 (2 HSPs)
chr8 (1-196)||(24181451-24181646)
chr8 (233-337)||(24181677-24181781)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 24181451 - 24181646
Alignment:
Q  1 tcatcaccaccaccactctcacatttaccaccttcttatcatcactcttcagctcctcacatgcttttagctcttggtggaaatgcttattcaacaccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24181451 tcatcaccaccaccactctcacatttaccaccttcttatcatcactcttcagctcctcacatgcttttagctcttggtggaaatgcttattcaacaccac 24181550  T
Q  101 cacaacactctgatcatgatcaacaccaccaccaccatcaaaaccatcttcaaagaaatctcaattttgcttcatctgttgttaagcttgaaagcc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24181551 cacaacactctgatcatgatcaacaccaccaccaccatcaaaaccatcttcaaagaaatctcaattttgcttcatctgttgttaagcttgagagcc 24181646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 24181677 - 24181781
Alignment:
Q  233 gtagtgggaaaaagaggtacaggacaaaattcagcaaggaacagaaagagaagatgcatggtttttctgagaaattgggttggaaaatgcaaaagagtga 332  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24181677 gtagtgggaaaaagaggtacaggacaaaattcagcaaggagcagaaagagaagatgcatggtttttctgagaaattgggttggaaaatgcaaaagagtga 24181776  T
Q  333 tgatg 337  Q
    |||||    
T  24181777 tgatg 24181781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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