View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_16 (Length: 328)
Name: NF18686_low_16
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 13880772 - 13880511
Alignment:
| Q |
11 |
cagtaactacatcttttgtttcctatgcgacatttaccatattactatatcttttgtaagatcgaattctatgctttttattccacgtagttttctatat |
110 |
Q |
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| T |
13880772 |
cagtaactacatcttttgtttcctatgcgacatttaccatattactacatcttttgtaagatcgaattctatgctttttattccacgtagttttctatat |
13880673 |
T |
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| Q |
111 |
acaaattaaccatgctgatcagtatgaaatggagttgattggtatacacctttttagtgtatttttaaattgaagatctttagagttagtgtgccatgag |
210 |
Q |
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| T |
13880672 |
acaaattaaccatcct---cagtatgaaatggagttgattggtatacacctttttagtgtatttttaaattgaagatctttagagttagtgtgccatgag |
13880576 |
T |
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| Q |
211 |
tttctctcttttaacactttatgttt-catgtttttagataatcaatttgttgacatgttaatta |
274 |
Q |
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| T |
13880575 |
tttctctcttttaacactttatgtttccatgtttttagataatcaatttgttgacatgttaatta |
13880511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 13254045 - 13253894
Alignment:
| Q |
23 |
cttttgtttcctatgcgacatttaccatattactatatcttttgtaagatcgaattctatgctttttattccacgtagttttctatatacaaattaacca |
122 |
Q |
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| T |
13254045 |
cttttgtttcctatgcgacatttaccatattactacatcttttgtaagatcaaattctatgctttttactccacttagttttttatatac-aattaatta |
13253947 |
T |
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| Q |
123 |
tgctgatcagtatgaaatggagttgattggtatacacctttttagtgtatttttaa |
178 |
Q |
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| T |
13253946 |
tcc---tcagtttgaaatagagtagattggtttacacctttttagtgtatttttaa |
13253894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 13253038 - 13252937
Alignment:
| Q |
177 |
aaattgaagatctttagagttagtgtgccatgagtttctctcttttaacactttatgttt-catg-tttttagataatcaatttgttgacatgttaatta |
274 |
Q |
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|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
13253038 |
aaattgaagatctttagagttagtgtgccaggagttcctttcttttaacactttatgtttccatgttttttagataatcaatttgttagcatgttaatta |
13252939 |
T |
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| Q |
275 |
tt |
276 |
Q |
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|| |
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| T |
13252938 |
tt |
13252937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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