View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18686_low_23 (Length: 264)

Name: NF18686_low_23
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18686_low_23
NF18686_low_23
[»] chr6 (20 HSPs)
chr6 (1-242)||(5431396-5431637)
chr6 (1-247)||(5276677-5276923)
chr6 (1-247)||(5174850-5175096)
chr6 (1-243)||(5075503-5075745)
chr6 (2-242)||(5356389-5356629)
chr6 (1-205)||(5148731-5148935)
chr6 (2-241)||(5133678-5133917)
chr6 (1-202)||(5341723-5341924)
chr6 (1-183)||(5183724-5183906)
chr6 (6-203)||(5423781-5423978)
chr6 (1-93)||(5395181-5395273)
chr6 (17-175)||(5104660-5104818)
chr6 (13-93)||(5381787-5381867)
chr6 (2-93)||(5068847-5068938)
chr6 (6-203)||(5348439-5348636)
chr6 (10-90)||(5445224-5445304)
chr6 (6-93)||(5368598-5368685)
chr6 (6-175)||(5094097-5094266)
chr6 (6-175)||(5159278-5159447)
chr6 (16-93)||(5691898-5691975)
[»] chr4 (19 HSPs)
chr4 (1-242)||(4126209-4126450)
chr4 (9-202)||(4358439-4358632)
chr4 (9-167)||(4343006-4343164)
chr4 (1-146)||(4322874-4323019)
chr4 (13-202)||(4351260-4351447)
chr4 (1-240)||(4333543-4333782)
chr4 (14-123)||(6589809-6589918)
chr4 (2-70)||(4135554-4135622)
chr4 (26-129)||(6750927-6751030)
chr4 (39-145)||(6541471-6541577)
chr4 (14-129)||(6535424-6535539)
chr4 (14-129)||(6794524-6794639)
chr4 (14-91)||(6649173-6649250)
chr4 (25-129)||(6813854-6813958)
chr4 (1-93)||(25568130-25568222)
chr4 (26-93)||(6834290-6834357)
chr4 (23-129)||(6624210-6624316)
chr4 (25-91)||(6713929-6713995)
chr4 (23-91)||(6500129-6500197)
[»] chr7 (1 HSPs)
chr7 (1-206)||(36215664-36215869)
[»] scaffold0294 (1 HSPs)
scaffold0294 (34-93)||(10473-10532)
[»] scaffold0373 (1 HSPs)
scaffold0373 (14-129)||(11664-11779)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5431637 - 5431396
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
5431637 caactctatcccctctgagtatatgcatatttctggttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagcatccaactg 5431538  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     |||||||||| |||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||     
5431537 ttccaactcattcacatcgtcaagtacaataagtattcttttatgacaaagcctgtcctttaatataattttcccagaatcaatactttgtatcttggtc 5431438  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgtaaa 242  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
5431437 gtcgttcctctgaagatatcagatagaagttgttcttgtaaa 5431396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5276923 - 5276677
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||||||||||||||||||||| | | | |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||    
5276923 caactctattccctctaagtatgtccttgtttctggtagtgataataattctacttcctgaaccaaaccaattacgacttccacacaaagcatccaactg 5276824  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
    |||||||||||| |||||||||||||  || | || ||| ||||||  ||| |||||||||||||| | ||||||||||||||||||||||||||||||     
5276823 ctccaactcatcgacatcgtcaagtatgataaatactctcttatgacgaagtctatcctttaatattacttttcctgaatcaatactttgtatcttggtc 5276724  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgtaaacccac 247  Q
    | ||||||| | |||| |||||||||||| |||| ||||||| ||||    
5276723 gacgttcctttaaagatatcagatagaagttgttgttgtaaatccac 5276677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5175096 - 5174850
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    ||||||||| |||||||||||| | | | |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||    
5175096 caactctatcccctctaagtatgtccttgtttctggtagtgataataattctacttcctgaaccaaaccaattacgacttccacacaaagcatccaactg 5174997  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
    |||||||||||| |||||||||||||  || | || ||| |||||| |||| |||||||||||||  | ||||||||||||||||||||||||||||||     
5174996 ctccaactcatcgacatcgtcaagtatgataaatactctcttatgacaaagtctatcctttaataatacttttcctgaatcaatactttgtatcttggtc 5174897  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgtaaacccac 247  Q
    | ||||||| | |||| |||||||||||| |||| ||||||| ||||    
5174896 gacgttcctttaaagatatcagatagaagttgttgttgtaaatccac 5174850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5075503 - 5075745
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| || ||| |||||| |||| |||||||||| ||  ||    
5075503 caactctattccctctaagtatatgcatatccctggttgtgataattattctactccctgaactaagccatttacgatttccgcacaaagcattcaattg 5075602  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
    |||||| |||  |||||| ||||||||||| || | |||||||||| | || |||||| |||||||| ||||||| || ||||||||| ||||||| |||    
5075603 ctccaattcactcacatcatcaagtacaataagaattcttttatgacatagtctatccattaatatagtttttcccgactcaatacttcgtatcttagtt 5075702  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgtaaac 243  Q
     ||||  || || | | |||| | ||||| |||||||||||||    
5075703 ttcgtatctttgcaaatatcaaaaagaagttgttcttgtaaac 5075745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 5356389 - 5356629
Alignment:
2 aactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgc 101  Q
    ||||||| |||| | ||||||||   ||| ||| |||||||||||||||||||||||  |||||||||||| | |||| ||||||||| ||| ||| ||     
5356389 aactctactcccacgaagtatatatctatctcttgttgtgataattattctactccccaaaccaaaccaatgatgactgccacacaaaacattcagttgg 5356488  T
102 tccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttg 201  Q
    |||||   ||  ||||| ||||||||||| |||| |||||||||| |||| |||||||||||||| ||||||||    ||||| |||||||| |||||||    
5356489 tccaaagtattaacatcatcaagtacaattagtactcttttatgacaaagtctatcctttaatatgatttttccattttcaatgctttgtattttggttg 5356588  T
202 tcgttcctctgaagacatcagatagaagatgttcttgtaaa 242  Q
    ||||  || || ||| |||||| ||||| ||||||||||||    
5356589 tcgtgtctttgcagatatcagagagaagttgttcttgtaaa 5356629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5148731 - 5148935
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| || || |||||||| | |||||||||||||||||||  ||  ||    
5148731 caactctattccctctcagtatatgcatatctctagttgtgataattattctacttcccgagccaaaccattgacgacttccacacaaagcagtcaattg 5148830  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     ||||||  |  |||||| ||||||||||  |||| |||||||  | | || |||||||||||| ||  ||||||||  ||||| | ||||||| |||||    
5148831 atccaacgtactcacatcatcaagtacaagaagtactcttttaccacagagtctatcctttaatgtatgttttcctgcctcaatgcattgtatcatggtt 5148930  T
201 gtcgt 205  Q
    |||||    
5148931 gtcgt 5148935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 5133678 - 5133917
Alignment:
2 aactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgc 101  Q
    |||||||||||  |||||||||||| | | |||||| || || ||||||| |||||||||||||||||| |||| ||||||||||||||||| ||  ||     
5133678 aactctattcctactaagtatatgcttgtctctggtagtaatgattattcgactccctgaaccaaaccatttactacttccacacaaagcattcatttgt 5133777  T
102 tccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttg 201  Q
    ||||    ||  ||||| ||||||||||| | || |||||||||  | || ||||||||||| ||| |||||||||| |||||  |||||||||| ||||    
5133778 tccagagtatttacatcatcaagtacaattaatactcttttatgccagagtctatcctttaaaatattttttcctgactcaatgttttgtatcttagttg 5133877  T
202 tcgttcctctgaagacatcagatagaagatgttcttgtaa 241  Q
    || || || ||  || |||| | ||||| |||||||||||    
5133878 tcatttctttgttgatatcaaacagaagttgttcttgtaa 5133917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5341924 - 5341723
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| | |||| |||||||||||||||||||||||||    ||||| ||||| | ||| ||    
5341924 caactctattccctctaagtatattcatatctctagttgtgatgactattttactccctgaaccaaaccaattacgctcaccacataaagctttcagttg 5341825  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     |||||   || |||||| || |||||||  |||| | | |||||| | || |||||||||||||||| |||||| || |||||  |||||||||| |||    
5341824 gtccaatgaattcacatcatctagtacaagaagtattttcttatgacagagtctatcctttaatataacttttcccgactcaatgttttgtatctttgtt 5341725  T
201 gt 202  Q
    ||    
5341724 gt 5341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5183724 - 5183906
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||||||||| ||||||||||| | ||||||||| |||||||| |||||||| ||||||| ||||| |||| |||  |||||||||||||||| ||| ||    
5183724 caactctattacctctaagtattttcatatttctagttgtgatgattattctgctccctggaccaagccaaatactccttccacacaaagcattcagttg 5183823  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaa 183  Q
     || ||   || |||||| |||||||| |  |||| ||||||||| || || |||||||||| |||| |||| ||||| ||||    
5183824 gtcaaatgtattcacatcatcaagtaccagaagtactcttttatggaagagtctatcctttagtatacttttccctgactcaa 5183906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 5423978 - 5423781
Alignment:
6 ctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctcca 105  Q
    |||||||| | |||||||||  ||| ||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||| || ||||    
5423978 ctattcccacaaagtatatgtctatctcttgttgtgataattattctactccccgaaccaaaccatttatgacttccacacaaagcattcagttggtcca 5423879  T
106 actcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttgtc 203  Q
    |   ||  || || ||||||| ||| |||| |||||| ||  | || |||||||| |||| || ||||||  | ||||| |||||||| |||||||||    
5423878 atgtattaacgtcatcaagtaaaattagtactcttttgtggcagagtctatccttcaatacaagttttccgaattcaatgctttgtattttggttgtc 5423781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5395273 - 5395181
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    |||||||||| ||||||||||| | ||||| |||  ||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||    
5395273 caactctattacctctaagtatgttcatatctctacttgtgatgattattctgctccctgaaccaagccaattacgacttccacacaatgcat 5395181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 5104660 - 5104818
Alignment:
17 aagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatccaca 116  Q
    |||||||||| |||  || ||||| || |||||||||||||| ||||||||||| |||| ||||||||||||||||||||| || || |    ||  |||    
5104660 aagtatatgcctatcccttgttgtaatgattattctactccccgaaccaaaccatttacaacttccacacaaagcatccagttggtcaagtgtattaaca 5104759  T
117 tcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcc 175  Q
    || ||||||||||| | || |||||||||  | || ||||||||||||||  |||||||    
5104760 tcatcaagtacaatcaatactcttttatggcagagtctatcctttaatatgttttttcc 5104818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 5381867 - 5381787
Alignment:
13 ctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    ||||||||||| |  ||| ||||||||| || ||||||||| |||||||||||||||| |||||||||||||||| |||||    
5381867 ctctaagtatacgtttatctctggttgtcatgattattctagtccctgaaccaaaccatttacgacttccacacagagcat 5381787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 5068847 - 5068938
Alignment:
2 aactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    |||||||||||| | |||||||||  |||  || || ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||    
5068847 aactctattcccacgaagtatatgtctatcccttgtggtgatgattattctacttcccgaaccaaaccacttacgacttccacacaaagcat 5068938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 5348636 - 5348439
Alignment:
6 ctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctcca 105  Q
    |||||||| | |||||||||  ||| ||| ||  |||| || ||||||||||| ||||||||||| |||| |||||| ||||||||||  |  || ||||    
5348636 ctattcccacaaagtatatgtctatctcttgtgttgatgataattctactccccgaaccaaaccatttacaacttccgcacaaagcatttaattggtcca 5348537  T
106 actcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttgtc 203  Q
    |   ||  ||||| ||||| ||||| |||| |||||||||  | || |||||||||||||| ||||||||    ||||| |||||||| |||||||||    
5348536 atgtattaacatcatcaagaacaattagtactcttttatggcagagtctatcctttaatatgatttttccgctttcaatgctttgtatattggttgtc 5348439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 5445304 - 5445224
Alignment:
10 tccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaag 90  Q
    ||||| |||||| |||||||| |||||||||||| |||||| |||||||||| |||||||| | ||||||| |||| ||||    
5445304 tccctttaagtaaatgcatatctctggttgtgattattattatactccctgagccaaaccattcacgacttgcacagaaag 5445224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 5368685 - 5368598
Alignment:
6 ctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    |||||||| |||||||||||  | | ||| || ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||    
5368685 ctattcccactaagtatatgtctgtctcttgtggtgatgattattctgcttcccgaaccaaaccacttacgacttccacacaaagcat 5368598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 5094266 - 5094097
Alignment:
6 ctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctcca 105  Q
    |||||||| |||||||||||  |||  || || || || |||||||||||||| | ||||||||| ||| ||||||| ||||||||||  || || ||||    
5094266 ctattcccactaagtatatgtttatcccttgtggtaatgattattctactccccggaccaaaccatttatgacttccgcacaaagcatttagttggtcca 5094167  T
106 actcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcc 175  Q
    |   ||  ||||| ||||||| ||| |||| ||||||| |  | || |||||||||||||| ||||||||    
5094166 atgtattaacatcatcaagtaaaattagtactcttttacggcagagtctatcctttaatatgatttttcc 5094097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 5159278 - 5159447
Alignment:
6 ctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctcca 105  Q
    |||||||| |||||||||||  |||  || || || || |||||||||||||| ||||||||||| ||| ||||||| ||||||||||  || || ||||    
5159278 ctattcccactaagtatatgtctatcccttgtggtaatgattattctactcccagaaccaaaccatttatgacttccgcacaaagcatttagttggtcca 5159377  T
106 actcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcc 175  Q
    |   ||  || || || |||| ||| |||| |||||||||  | || |||||||||||||| ||||||||    
5159378 atgtattaacgtcatcgagtaaaattagtactcttttatggcagagtctatcctttaatatgatttttcc 5159447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 5691898 - 5691975
Alignment:
16 taagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    ||||||||||| ||| ||| ||||| |||||||||||||| || | ||||||||| | || |  ||||||||||||||    
5691898 taagtatatgcttatctctagttgttataattattctactgccgggaccaaaccattcacaagatccacacaaagcat 5691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4126209 - 4126450
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    ||||||||| ||||| |||||||||| |||  ||||| ||||| |||||||||||||||| | ||||||| |||| |||||||||||||||||  || ||    
4126209 caactctatcccctcgaagtatatgcttatccctggtcgtgatgattattctactccctggagcaaaccatttacaacttccacacaaagcattgagttg 4126308  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     ||||| | || |||||||||||||||||  || | |||||||||| |||| |  ||||||||||||  ||| ||||| |||||| |||| |||||||||    
4126309 gtccaatttattcacatcgtcaagtacaagaagaactcttttatgacaaagtcgttcctttaatatagatttccctgattcaatattttgaatcttggtt 4126408  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgtaaa 242  Q
    || ||| || |||| | |||| | | ||| ||||||||||||    
4126409 gtggtttctttgaaaatatcatacataagttgttcttgtaaa 4126450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 4358632 - 4358439
Alignment:
9 ttccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaact 108  Q
    |||||||||||||||||| |||  || |||||||| || |||||||| |||| | ||||||| |||| |||||||||||||||||  || || ||||| |    
4358632 ttccctctaagtatatgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttagttggtccaatt 4358533  T
109 catccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttgt 202  Q
     ||  ||||||||||||||||| |||| |||||||||| | || || ||||||||||||  ||||||||| ||||| |||||||||||||||||    
4358532 tattgacatcgtcaagtacaataagtactcttttatgacacagtctttcctttaatatagattttcctgattcaatgctttgtatcttggttgt 4358439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 4343164 - 4343006
Alignment:
9 ttccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaact 108  Q
    |||||||||||||||||| |||  ||||||||||| |||||||||||||||| | |||||||  |||||||||||||||||||||  || || ||||| |    
4343164 ttccctctaagtatatgcttatccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatt 4343065  T
109 catccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatata 167  Q
     || |||||||||||||||||  || | |||||||||| | ||||| ||||||||||||    
4343064 tattcacatcgtcaagtacaagaagaactcttttatgacagagcctttcctttaatata 4343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4322874 - 4323019
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||| ||||| ||||||||||||||| ||| ||| |||||||| ||||||||||| |||| | ||||||| |||| |||||||||||||||||  |||||    
4322874 caaccctatttcctctaagtatatgcttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctg 4322973  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatga 146  Q
     ||||  | || |||||||||||||||||  |||| ||||||||||    
4322974 gtccagtttattcacatcgtcaagtacaagaagtactcttttatga 4323019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 4351447 - 4351260
Alignment:
13 ctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatc 112  Q
    |||||||||||| |||||  ||||||||||| |||||||||||||| | | ||||||| |||| |||||||||||||| ||  || || ||||| | ||     
4351447 ctctaagtatatccatatccctggttgtgatgattattctactcccaggagcaaaccatttacaacttccacacaaagtattaagttggtccaatttatt 4351348  T
113 cacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggttgt 202  Q
    ||||||||||||||||| |||  | || |||||| | || || ||||||||||||  |||||| || |||||  |||||||||| |||||    
4351347 cacatcgtcaagtacaaggag--aactcttatgacagagtctttcctttaatatagattttcccgactcaatgttttgtatctttgttgt 4351260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4333782 - 4333543
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    ||||||||| || ||| ||||||||| |||  || ||||| || |||||||||||||| | | ||||||| |||||||||||||||| |  ||  || ||    
4333782 caactctatcccttctcagtatatgcttatccctagttgtaatgattattctactcccaggagcaaaccatttacgacttccacacagaatatttagttg 4333683  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     ||||| | ||  ||||||||||||||||| || | |||||||||| | || || ||||||||||||  ||||||||  || ||  |||||||||||| |    
4333682 gtccaatttattaacatcgtcaagtacaataagaactcttttatgacatagtctgtcctttaatatatattttcctgcttctatgttttgtatcttggat 4333583  T
201 gtcgttcctctgaagacatcagatagaagatgttcttgta 240  Q
    || ||| || |||| | |||| | | ||| ||||||||||    
4333582 gtggtttctttgaaaatatcatacataagttgttcttgta 4333543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 6589809 - 6589918
Alignment:
14 tctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatcc 113  Q
    |||||| | |||||||| ||| |||||||| |||||||||||||| | ||||||||||| ||| || ||||||||||| |  ||||||||||| |||| |    
6589809 tctaagaagatgcatatctcttgttgtgattattattctactccccggaccaaaccaatcacggctaccacacaaagcctttagctgctccaattcattc 6589908  T
114 acatcgtcaa 123  Q
    ||||| ||||    
6589909 acatcatcaa 6589918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 4135554 - 4135622
Alignment:
2 aactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaacca 70  Q
    |||||||| |||||||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||    
4135554 aactctatcccctctaattatttgcttatctctggttgtgatgattattctactccctgaaccaaacca 4135622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 6751030 - 6750927
Alignment:
26 catatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatccacatcgtcaagt 125  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||| | ||| |||||||||||||| |  || || ||||| |||| |||||| |||||     
6751030 catatttcttgttgtgatgattattctactccctggaccaaaccattcacggcttccacacaaagcttttagttggtccaattcattcacatcatcaagc 6750931  T
126 acaa 129  Q
    ||||    
6750930 acaa 6750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 6541471 - 6541577
Alignment:
39 gtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatccacatcgtcaagtacaatgagtaatc 138  Q
    ||||| |||||| | ||||| | |||||||||||  ||||||||||||||| | |  | ||| ||||||| ||| |||||||||||||||||||||| ||    
6541471 gtgatgattattttgctcccagcaccaaaccaatatcgacttccacacaaaacttttaactgatccaacttatcaacatcgtcaagtacaatgagtactc 6541570  T
139 ttttatg 145  Q
    |||||||    
6541571 ttttatg 6541577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 6535424 - 6535539
Alignment:
14 tctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatcc 113  Q
    |||||| | ||||||||  || |||||||| |||||||||||||| ||||||||||| |  || |||||||||||||| |  || || ||||| ||||      
6535424 tctaagaagatgcatatcccttgttgtgatgattattctactccccgaaccaaaccattctcggcttccacacaaagcctttagttggtccaattcatta 6535523  T
114 acatcgtcaagtacaa 129  Q
    ||||| ||||||||||    
6535524 acatcatcaagtacaa 6535539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 6794639 - 6794524
Alignment:
14 tctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatcc 113  Q
    |||||| | ||| |||||||| |||||||| |||||||||||||| | ||||||||| || || || |||||||| || |  ||||| ||||| |||| |    
6794639 tctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcggctaccacacaatgcctttagctggtccaattcattc 6794540  T
114 acatcgtcaagtacaa 129  Q
    ||||| ||||| ||||    
6794539 acatcatcaagcacaa 6794524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 6649250 - 6649173
Alignment:
14 tctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagc 91  Q
    |||||| | |||||||| ||| |||||||| || ||||||||||| | ||||||||| | ||| ||||||||||||||    
6649250 tctaagaagatgcatatctctcgttgtgatgataattctactccccggaccaaaccattcacggcttccacacaaagc 6649173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 6813958 - 6813854
Alignment:
25 gcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatccacatcgtcaag 124  Q
    |||||||||| |||||||| ||||||||||| ||   ||||||||| |   | |||||||||||||| |  ||||||||||| |||| |||||| |||||    
6813958 gcatatttctagttgtgattattattctactgcccagaccaaaccattcgtggcttccacacaaagcctttagctgctccaattcattcacatcatcaag 6813859  T
125 tacaa 129  Q
     ||||    
6813858 cacaa 6813854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 25568222 - 25568130
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    |||||||||  |||||||| || | ||||| ||| || ||||| | ||||||||| || ||||||||||| | ||||| ||||||||||||||    
25568222 caactctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaaccattgacgacgtccacacaaagcat 25568130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 6834357 - 6834290
Alignment:
26 catatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    ||||| ||| || ||||| ||||||||||| || ||||||||||| |  |||||||||||||||||||    
6834357 catatctcttgtcgtgatgattattctacttccggaaccaaaccattcgcgacttccacacaaagcat 6834290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 6624210 - 6624316
Alignment:
23 atgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatccacatcgtca 122  Q
    ||||||||  || |||||||| || ||||||||||| | ||||||||| | ||| |||||||||||||| |  || || ||||| |||| |||||| |||    
6624210 atgcatatcccttgttgtgatgataattctactccccggaccaaaccattcacggcttccacacaaagcctttagttggtccaattcattcacatcatca 6624309  T
123 agtacaa 129  Q
    || ||||    
6624310 agcacaa 6624316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 6713995 - 6713929
Alignment:
25 gcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagc 91  Q
    |||||| ||| |||||||| |||| ||||||||| | ||||||||| || || ||||||||||||||    
6713995 gcatatctcttgttgtgatgattactctactccccggaccaaaccatttgcggcttccacacaaagc 6713929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 6500129 - 6500197
Alignment:
23 atgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagc 91  Q
    ||||| || ||| ||||||||||||||||||||||| | ||||||||| |  || |||||| |||||||    
6500129 atgcaaatctcttgttgtgataattattctactccccggaccaaaccattcgcggcttccaaacaaagc 6500197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 36215664 - 36215869
Alignment:
1 caactctattccctctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctg 100  Q
    |||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||   ||||||||| | ||||||||||||||||||||  |  ||    
36215664 caactctattccctctaagtatatgcctatctctagttgtgatgattattctactccccacaccaaaccattgacgacttccacacaaagcattaaattg 36215763  T
101 ctccaactcatccacatcgtcaagtacaatgagtaatcttttatgaaaaagcctatcctttaatataatttttcctgaatcaatactttgtatcttggtt 200  Q
     |||||   |  ||| || ||||||||||  |||| |||||||  | | || ||||| |||||||||||||||||||  |||||||||||||| ||||||    
36215764 atccaatgtactcacgtcatcaagtacaagaagtactcttttaccacatagtctatcttttaatataatttttcctgcctcaatactttgtattttggtt 36215863  T
201 gtcgtt 206  Q
    ||||||    
36215864 gtcgtt 36215869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 10473 - 10532
Alignment:
34 tggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcat 93  Q
    ||||||| || ||||||||| |||||||||||||||| | ||||||||||||||||||||    
10473 tggttgtaatgattattctagtccctgaaccaaaccattcacgacttccacacaaagcat 10532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 11664 - 11779
Alignment:
14 tctaagtatatgcatatttctggttgtgataattattctactccctgaaccaaaccaattacgacttccacacaaagcatccagctgctccaactcatcc 113  Q
    |||||| | ||| |||||||| |||||||| |||||||||||||| | ||||||||| || || || |||||||| || |  ||||| ||||| |||| |    
11664 tctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcggctaccacacaatgcctttagctggtccaattcattc 11763  T
114 acatcgtcaagtacaa 129  Q
    ||||| ||||| ||||    
11764 acatcatcaagcacaa 11779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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