View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18686_low_27 (Length: 233)
Name: NF18686_low_27
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18686_low_27 |
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| [»] scaffold0544 (1 HSPs) |
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| [»] scaffold0337 (2 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0544 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 10894 - 11098
Alignment:
| Q |
14 |
aatatgtaacacaatcagaagcacctaacaacccactcatgtaatgatagaaagttctttctctcaccaaaatcaagaagattgctacacgttaacgact |
113 |
Q |
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| T |
10894 |
aatatgtaacacaatcagaagcacctaacaacccactcatgtaatgatagaaagttctttctctcaccaaaatcaagaagattgcaacacgttaacgact |
10993 |
T |
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| Q |
114 |
taattagggagatgaatgatgcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatg |
213 |
Q |
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| T |
10994 |
taattagggagatgaatgatgcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatg |
11093 |
T |
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| Q |
214 |
atgtt |
218 |
Q |
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||||| |
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| T |
11094 |
atgtt |
11098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 19523 - 19322
Alignment:
| Q |
17 |
atgtaacacaatcagaagcacctaacaacccactcatgtaatgatagaaagttctttctctcaccaaaatcaagaagattgctacacgttaacgacttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19523 |
atgtaacacaatcagaagcacctaacaacccactcatgtaatgatagaaagttctttctctcaccaaaatcaagaagattgcaacacgttaacgacttaa |
19424 |
T |
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| Q |
117 |
ttagggagatgaatgatgcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatgatg |
216 |
Q |
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| T |
19423 |
ttagggagatgaatgatgcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatgatg |
19324 |
T |
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| Q |
217 |
tt |
218 |
Q |
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|| |
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| T |
19323 |
tt |
19322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 6707 - 6513
Alignment:
| Q |
24 |
acaatcagaagcacctaacaacccactcatgtaatgatagaaagttctttctctcaccaaaatcaagaagattgctacacgttaacgacttaattaggga |
123 |
Q |
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| T |
6707 |
acaataagaagcacctaacaacccactcacgtaatgatagaaagttctttctctcaccaaaatcaagaagattacaacacgttaacgacttaattaggga |
6608 |
T |
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| Q |
124 |
gatgaatgatgcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatgatgtt |
218 |
Q |
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| T |
6607 |
gatgaatgaagcacgtaggacaaaataaggcatacaatcagttgtgtattgaatagcatgaatcgataaatcaagaatcgatgattcatgatgtt |
6513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 27504038 - 27503907
Alignment:
| Q |
70 |
ctttctctcaccaaaatcaagaaga---ttgctacacgttaacgacttaattagggagatgaatgatgcacgtaggacaaaataaggcatacaatcagtt |
166 |
Q |
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||||||||||||||||||||||||| |||| |||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||||| || |
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| T |
27504038 |
ctttctctcaccaaaatcaagaagaaaattgcaacacgttatgg-cttaattagggagagcaatgatgcacataggacaaaataaggcatacaatcaatt |
27503940 |
T |
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| Q |
167 |
gtgtattgaatagcatgaatcgataaatcaaga |
199 |
Q |
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||||||||||| | |||||||||| || ||||| |
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| T |
27503939 |
gtgtattgaatgggatgaatcgatgaagcaaga |
27503907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 67290 - 67360
Alignment:
| Q |
64 |
aaagttctttctctcaccaaaatcaagaagattgctacacgttaacgacttaattagggagatgaatgatg |
134 |
Q |
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| T |
67290 |
aaagtactttctctcaccaaaaccaagaagattgcaacacgttaatatcttaattagggggatgaatgatg |
67360 |
T |
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