View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18686_low_4 (Length: 526)

Name: NF18686_low_4
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18686_low_4
NF18686_low_4
[»] chr3 (6 HSPs)
chr3 (227-330)||(5706589-5706692)
chr3 (227-344)||(19434030-19434148)
chr3 (237-330)||(28059339-28059432)
chr3 (237-330)||(28069764-28069857)
chr3 (61-154)||(29755083-29755178)
chr3 (227-325)||(6912382-6912480)
[»] chr5 (7 HSPs)
chr5 (44-154)||(21849541-21849651)
chr5 (44-154)||(21857455-21857565)
chr5 (237-330)||(42784544-42784639)
chr5 (270-398)||(27199324-27199451)
chr5 (433-508)||(42784745-42784827)
chr5 (238-330)||(5520474-5520567)
chr5 (476-516)||(27199188-27199228)
[»] chr6 (8 HSPs)
chr6 (434-512)||(28039955-28040033)
chr6 (237-330)||(22013006-22013101)
chr6 (243-330)||(28039772-28039861)
chr6 (258-516)||(27650110-27650389)
chr6 (252-330)||(27526302-27526382)
chr6 (228-325)||(33062070-33062167)
chr6 (471-508)||(22013259-22013295)
chr6 (471-508)||(27526536-27526573)
[»] chr4 (6 HSPs)
chr4 (248-406)||(5359589-5359745)
chr4 (227-344)||(27562177-27562295)
chr4 (238-330)||(54352859-54352952)
chr4 (434-508)||(51533056-51533137)
chr4 (227-325)||(4764539-4764637)
chr4 (273-325)||(18695215-18695267)
[»] chr1 (8 HSPs)
chr1 (227-344)||(47051564-47051682)
chr1 (237-330)||(42565158-42565253)
chr1 (433-508)||(42565366-42565448)
chr1 (227-330)||(16099788-16099894)
chr1 (252-330)||(14649342-14649422)
chr1 (252-330)||(14659132-14659212)
chr1 (471-508)||(14649576-14649613)
chr1 (471-508)||(14659366-14659403)
[»] chr2 (7 HSPs)
chr2 (227-344)||(39155678-39155796)
chr2 (433-508)||(809527-809609)
chr2 (237-309)||(2587269-2587342)
chr2 (252-330)||(44323129-44323209)
chr2 (239-363)||(9312315-9312440)
chr2 (275-329)||(15001751-15001805)
chr2 (471-508)||(44323367-44323403)
[»] chr8 (3 HSPs)
chr8 (237-330)||(18981456-18981551)
chr8 (433-508)||(18981664-18981746)
chr8 (232-391)||(26341416-26341575)
[»] chr7 (3 HSPs)
chr7 (227-330)||(29469382-29469485)
chr7 (471-516)||(36265241-36265286)
chr7 (113-156)||(36265618-36265661)
[»] scaffold0438 (2 HSPs)
scaffold0438 (233-391)||(8595-8753)
scaffold0438 (232-391)||(11577-11736)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 5706692 - 5706589
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaattatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattta 326  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||| |||    
T  5706692 aaatggggaacacaccctttcaatatttttcttgttgttgaaattatgtttaaggtcgtgaatattaatatggtctctatttggatttatctatgactta 5706593  T
Q  327 ttga 330  Q
    ||||    
T  5706592 ttga 5706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 19434030 - 19434148
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||||||||  |||||| |||||||||||| || |||| | |||||||||| |||||  |||||| ||||||||||||||||| |||||||||| ||    
T  19434030 aaatggggaacatgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgactt 19434129  T
Q  326 attgaaaaaataatttgaa 344  Q
    |||||  |||| |||||||    
T  19434130 attgagcaaatgatttgaa 19434148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 28059432 - 28059339
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||| ||||||||||| |||  |||||||||| |||||| ||||||||||  ||||||||| | |||||||||||||    
T  28059432 cacaccctttgaacatttttcttatcgttgaaattgatg--taaggtcatgaatattattatggtctctgttttgaacttgtttatgatttattga 28059339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 28069857 - 28069764
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||| ||||||||||| |||  |||||||||| |||||| ||||||||||  ||||||||| | |||||||||||||    
T  28069857 cacaccctttgaacatttttcttatcgttgaaattgatg--taaggtcatgaatattattatggtctctgttttgaacttgtttatgatttattga 28069764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 29755178 - 29755083
Alignment:
Q  61 tgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatat--ttgtgagttgat 154  Q
    |||||||||||||||||||||||  |||||||| ||| |||| | | ||| ||||| || ||||  |||||| |||||||||  ||||||||||||    
T  29755178 tgtatgatgttcagattcggtgaaaattgctctagtgattattacggaagacattgttaagaacatagttgattcgtcatatagttgtgagttgat 29755083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 6912480 - 6912382
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    |||||||||||||||||||| ||| |||||||| ||  |||   | |||||||| |||||  |||||| |||||||||| |||||| |||||||||||||    
T  6912480 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctgtttgaatttatctatgattt 6912382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 21849541 - 21849651
Alignment:
Q  44 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 143  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21849541 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21849640  T
Q  144 tgtgagttgat 154  Q
    |||||||||||    
T  21849641 tgtgagttgat 21849651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 21857455 - 21857565
Alignment:
Q  44 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 143  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21857455 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21857554  T
Q  144 tgtgagttgat 154  Q
    |||||||||||    
T  21857555 tgtgagttgat 21857565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 42784544 - 42784639
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  42784544 cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 42784639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 398
Target Start/End: Complemental strand, 27199451 - 27199324
Alignment:
Q  270 ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattgaaaaaataatttgaagttgagatttcgttgcatacactac 369  Q
    |||||||||| |||||| ||||||||||||| |||| |||||||| | |||||||||||||  ||||  ||||||||| | |||| ||||||||||||||    
T  27199451 ttatgtttaatgtcatgaatattaatatggtgtctagttgaacttgtatatgatttattgagcaaat-gtttgaagttaaaatttggttgcatacactac 27199353  T
Q  370 -ggcatatgttttgagatgttgacaaaaat 398  Q
     | |||| | ||||||| ||||||||||||    
T  27199352 tgacataag-tttgagaggttgacaaaaat 27199324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 42784745 - 42784827
Alignment:
Q  433 attatacattccatttggatttgggttttggattgacctatg-------atttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||| |||||||||||||| ||||| ||||||||||||       ||||||||||||||||||||||||||||||||||    
T  42784745 attatacactccatttggatttgagttttcgattgacctatgtcttatgatttataaagtagtggatttaagaattgaaattt 42784827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 5520567 - 5520474
Alignment:
Q  238 acaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattga 330  Q
    ||||||||| |||||||||| | || |||| | |||||||||| |||||  |||||| ||||||||||||||| | |||||||||| |||||||    
T  5520567 acaccctttgaacatttttcctctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttattga 5520474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 516
Target Start/End: Complemental strand, 27199228 - 27199188
Alignment:
Q  476 tttataaagtagtggatttaagaattgaaatttgatttcat 516  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  27199228 tttataaagtagtgaatttaagaattgaaatttgatttcat 27199188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 434 - 512
Target Start/End: Original strand, 28039955 - 28040033
Alignment:
Q  434 ttatacattccatttggatttgggttttggattgacctatgatttataaagtagtggatttaagaattgaaatttgatt 512  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  28039955 ttatacactccatttggatttgggttttggattgacctatgatttatagagtattggatttaagaattgaaatttgatt 28040033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 22013006 - 22013101
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  22013006 cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 22013101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 28039772 - 28039861
Alignment:
Q  243 ctttcaacatttttcttgtcgttgaaa--ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattga 330  Q
    |||| ||||||||||||||| ||||||  |||||||||| |||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  28039772 ctttgaacatttttcttgtccttgaaaatttatgtttaatgtcatgaatattaatatggtgtctagttgaacttgtctatgatttattga 28039861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 516
Target Start/End: Original strand, 27650110 - 27650389
Alignment:
Q  258 ttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattgaaaaaataatttgaagttgagatttcg 356  Q
    |||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||  |||   |||  | ||||||| | |    
T  27650110 ttgttgttgaaatttatgtttaaggtcatgaatattgatatggtctctatttgaacttgtctatgatttatagagcaaaggttttataattgagatatgg 27650209  T
Q  357 ttgcatacactacgg-catatgttttgagatgttgacaaaaat-----------------tgtttttgctttgaaatttatttcgatactattcattata 438  Q
    ||||||  ||||| | |||| |||||||||||||||||||||                  |||||||| ||||||| |||||  |||||||||    |||    
T  27650210 ttgcatttactactgacataagttttgagatgttgacaaaaaaatggtttttgagaaatatgtttttgttttgaaaattattatgatactatt----ata 27650305  T
Q  439 cattccatttggatttgggttttggattgacctatgattta-------taaagtagtggatttaagaattgaaatttgatttcat 516  Q
    || |||||||||||| |||| ||||||| ||||||||||||       |||||||||| ||||||||||||||||||||||||||    
T  27650306 cactccatttggatt-gggtgttggatttacctatgatttatggtttataaagtagtgaatttaagaattgaaatttgatttcat 27650389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 27526302 - 27526382
Alignment:
Q  252 tttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    ||||| || ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  27526302 ttttttttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 27526382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 33062070 - 33062167
Alignment:
Q  228 aatggggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||||||||||||||| ||| |||||||| ||  |||   | |||||||| |||||  |||||| |||||||||| |||||| |||||||||||||    
T  33062070 aatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctgtttgaatttatctatgattt 33062167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 22013259 - 22013295
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22013259 tatgatttataa-gtagtggatttaagaattgaaattt 22013295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 27526536 - 27526573
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  27526536 tatgatttatgaagtggtggatttaagaattgaaattt 27526573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 248 - 406
Target Start/End: Complemental strand, 5359745 - 5359589
Alignment:
Q  248 aacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattgaaaaaataatttgaagt 346  Q
    ||||||||||||||| |||||||| |||| |||||||||| || |    ||||||||||||||||||| |||||||||||||||  |||   |||||| |    
T  5359745 aacatttttcttgtcattgaaatttatgtataaggtcatgaatct----atggtctctatttgaacttgtctatgatttattgagcaaaggttttgaaat 5359650  T
Q  347 tgagatttcgttgcatacactac-ggcatatgttttgagatgttgacaaaaattgtttttg 406  Q
    |||||||| |||||||| |||||  ||||| |||||||||||||||||||||| |||||||    
T  5359649 tgagatttggttgcatatactactagcataagttttgagatgttgacaaaaatggtttttg 5359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 27562295 - 27562177
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||||||||| |||||| |||||||||||| || |||| | |||||||||| |||||  |||||| ||||||||||||||| | |||||||||| ||    
T  27562295 aaatggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgactt 27562196  T
Q  326 attgaaaaaataatttgaa 344  Q
    |||||  |||| |||||||    
T  27562195 attgagcaaatgatttgaa 27562177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 54352952 - 54352859
Alignment:
Q  238 acaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattga 330  Q
    ||||||||| |||||||||||| || |||| | |||||||||| |||||  |||||| ||||||||||||||| | |||||||||| |||||||    
T  54352952 acaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttattga 54352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 51533056 - 51533137
Alignment:
Q  434 ttatacattccatttggatttgggttttggattgacctatg-------atttataaagtagtggatttaagaattgaaattt 508  Q
    ||||||| |||||||||||||| ||||| ||||||||||||       ||||||||||||| ||||||||||||||||||||    
T  51533056 ttatacactccatttggatttgagttttcgattgacctatgtcttatgatttataaagtagcggatttaagaattgaaattt 51533137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 4764637 - 4764539
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    |||||||||||||||||||| ||| |||||||| ||  |||   | |||||||| |||||  |||||| |||||||||| |||||| |||||||||||||    
T  4764637 aaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctgtttgaatttatctatgattt 4764539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 18695267 - 18695215
Alignment:
Q  273 tgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||| |||||  |||||| |||||||||| |||||| |||||||||||||    
T  18695267 tgtttaaagtcatcgatattattatggtctctgtttgaatttatctatgattt 18695215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 47051682 - 47051564
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    |||||||||||||||||||| |||||||||||| || |||| | |||||||||| |||||  |||||| ||||||||||||||||| |||||||||| ||    
T  47051682 aaatggggaacacaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgactt 47051583  T
Q  326 attgaaaaaataatttgaa 344  Q
    |||||  |||| |||||||    
T  47051582 attgagcaaatgatttgaa 47051564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 42565158 - 42565253
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||  ||||||||| |||||||||||||||    
T  42565158 cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaaaattattatggtctctgttttgaacttgtctatgatttattga 42565253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 42565366 - 42565448
Alignment:
Q  433 attatacattccatttggatttgggttttggattgacctatg-------atttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||| |||||||||||||| ||||| ||||||||||||       ||||||||||||||||||||||||||||||||||    
T  42565366 attatacactccatttggatttgagtttttgattgacctatgtcttatgatttataaagtagtggatttaagaattgaaattt 42565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 16099788 - 16099894
Alignment:
Q  227 aaatggggaacacaccctttcaacattttt--cttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgat 323  Q
    |||||||||||||||||||| |||||||||  ||| || |||| | |||||||||| |||||  |||||| ||||||||||||||| | ||||||||||     
T  16099788 aaatggggaacacaccctttgaacatttttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgac 16099887  T
Q  324 ttattga 330  Q
    |||||||    
T  16099888 ttattga 16099894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 14649342 - 14649422
Alignment:
Q  252 tttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    ||||| || ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  14649342 ttttttttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 14649422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 14659132 - 14659212
Alignment:
Q  252 tttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    ||||| || ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  14659132 ttttttttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 14659212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 14649576 - 14649613
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  14649576 tatgatttatgaagtggtggatttaagaattgaaattt 14649613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 14659366 - 14659403
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  14659366 tatgatttatgaagtggtggatttaagaattgaaattt 14659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 39155796 - 39155678
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||||||||| |||||| |||||||||||| || |||| | |||||||||| |||||  |||||| ||||||||||||||| | |||||||||| ||    
T  39155796 aaatggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgactt 39155697  T
Q  326 attgaaaaaataatttgaa 344  Q
    |||||  |||| |||||||    
T  39155696 attgagcaaatgatttgaa 39155678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 809609 - 809527
Alignment:
Q  433 attatacattccatttggatttgggttttggattgacctatg-------atttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||| |||||||||||||| ||||| ||||||||||||       ||||||||||||||||||||||||||||||||||    
T  809609 attatacactccatttggatttgagttttcgattgacctatgtctgatgatttataaagtagtggatttaagaattgaaattt 809527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 2587269 - 2587342
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttg 309  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||||  ||||| |||||||||| ||||    
T  2587269 cacaccctttgaacatttttcttatcgttgaaattaatgtttaaggtcatgattattattatggtctctctttg 2587342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 44323129 - 44323209
Alignment:
Q  252 tttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    ||||| || ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| |||||||||||||||    
T  44323129 ttttttttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattga 44323209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 9312440 - 9312315
Alignment:
Q  239 caccctttcaacatttttcttgtcgttga-aattatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattgaaaaaata 337  Q
    ||||||||||| ||||||||| || |||| | ||||||| || |||||  ||| ||  ||||||| |||||  | |||||||||| |||||||| ||| |    
T  9312440 caccctttcaagatttttcttctcattgatatttatgttgaaagtcattgatactataatggtctttatttagatttatctatgacttattgaacaaaca 9312341  T
Q  338 atttgaagttgagatttcgttgcata 363  Q
    ||||||| ||||||||| ||||||||    
T  9312340 atttgaaattgagatttggttgcata 9312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 15001805 - 15001751
Alignment:
Q  275 tttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattg 329  Q
    ||||| |||||  |||||| |||||| |||||||||| |||||||||||||||||    
T  15001805 tttaaagtcatcgatattattatggtatctatttgaatttatctatgatttattg 15001751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 44323367 - 44323403
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||||||| |||||||||||||||||||||||||    
T  44323367 tatgatttataa-gtagtggatttaagaattgaaattt 44323403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 18981456 - 18981551
Alignment:
Q  237 cacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctct-atttgaacttatctatgatttattga 330  Q
    |||||||||| |||||||||||  ||||||||||| ||||||||||||||| |||||| ||||||||||  ||||||||| ||| |||||||||||    
T  18981456 cacaccctttgaacatttttctcatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctgtgatttattga 18981551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 18981664 - 18981746
Alignment:
Q  433 attatacattccatttggatttgggttttggattgacctatg-------atttataaagtagtggatttaagaattgaaattt 508  Q
    |||||||| |||||||||||||| |||||  |||||||||||       ||||||||||||||||||||||||||||||||||    
T  18981664 attatacactccatttggatttgagttttcaattgacctatgtcttatgatttataaagtagtggatttaagaattgaaattt 18981746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 391
Target Start/End: Complemental strand, 26341575 - 26341416
Alignment:
Q  232 gggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattga 330  Q
    ||||||||||||||| |||||||| |||||| |||| ||| |||||||| |||||  ||| || || |||||||||| | | |||||||||  |||||||    
T  26341575 gggaacacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattacggtctctattaggaattatctatggcttattga 26341477  T
Q  331 aaaaataatttgaagttgagatttcgttgcatacactacggcatatgttttgagatgttga 391  Q
      |||| ||||| | |||||||||  | ||||| || | |||||  |||||||||||||||    
T  26341476 gcaaatgatttgtaattgagatttgatggcatatacgatggcatgagttttgagatgttga 26341416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 29469485 - 29469382
Alignment:
Q  227 aaatggggaacacaccctttcaacatttttcttgtcgttgaaa-ttatgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgattt 325  Q
    ||||||||||||||||||||||| ||||| |||||| |||| | |||  ||||| |||||  | |||||||||||||||||||| | | |||||||||||    
T  29469485 aaatggggaacacaccctttcaatatttt-cttgtcattgatacttacatttaaagtcatcaaaattaatatggtctctatttggattcatctatgattt 29469387  T
Q  326 attga 330  Q
    |||||    
T  29469386 attga 29469382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 36265286 - 36265241
Alignment:
Q  471 tatgatttataaagtagtggatttaagaattgaaatttgatttcat 516  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||    
T  36265286 tatggtttatagagtagtggatttaagaattgaaatttgatttcat 36265241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 36265661 - 36265618
Alignment:
Q  113 attgctaggaacggagttgactcgtcatatttgtgagttgatga 156  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  36265661 attgctaggaatggagttgactcgtcatagttgtgagttgatga 36265618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 8753 - 8595
Alignment:
Q  233 ggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattgaa 331  Q
    |||||||||||||| |||||||| |||||| |||| ||| |||||||| |||||  ||| || ||||||||||||| | | |||||||||  |||||||     
T  8753 ggaacacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattatggtctctattaggaattatctatggcttattgag 8655  T
Q  332 aaaataatttgaagttgagatttcgttgcatacactacggcatatgttttgagatgttga 391  Q
     |||| ||||| | |||||||||  | ||||| || | |||||  |||||||||||||||    
T  8654 caaatgatttgtaattgagatttgatggcatatacgatggcatgagttttgagatgttga 8595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 391
Target Start/End: Complemental strand, 11736 - 11577
Alignment:
Q  232 gggaacacaccctttcaacatttttcttgtcgttgaaatt-atgtttaaggtcatgtatattaatatggtctctatttgaacttatctatgatttattga 330  Q
    ||||||||||||||| |||||||| |||||| |||| ||| |||||||| |||||  ||| || || |||||||||| | | |||||||||  |||||||    
T  11736 gggaacacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattacggtctctattaggaattatctatggcttattga 11638  T
Q  331 aaaaataatttgaagttgagatttcgttgcatacactacggcatatgttttgagatgttga 391  Q
      |||| ||||| | |||||||||  | ||||| || | |||||  |||||||||||||||    
T  11637 gcaaatgatttgtaattgagatttgatggcatatacgatggcatgagttttgagatgttga 11577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University