View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18686_low_8 (Length: 441)

Name: NF18686_low_8
Description: NF18686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18686_low_8
NF18686_low_8
[»] chr7 (3 HSPs)
chr7 (16-422)||(47427447-47427833)
chr7 (320-399)||(5006558-5006637)
chr7 (267-383)||(44151476-44151592)
[»] chr6 (1 HSPs)
chr6 (319-385)||(1402952-1403018)
[»] chr4 (4 HSPs)
chr4 (274-398)||(49219082-49219206)
chr4 (338-396)||(30024645-30024703)
chr4 (338-385)||(4071838-4071885)
chr4 (324-385)||(45128363-45128424)
[»] chr3 (6 HSPs)
chr3 (316-384)||(37689429-37689497)
chr3 (339-399)||(1395613-1395673)
chr3 (233-385)||(36646344-36646496)
chr3 (319-401)||(24235731-24235813)
chr3 (338-400)||(29771750-29771812)
chr3 (266-383)||(40122748-40122864)
[»] scaffold0590 (1 HSPs)
scaffold0590 (342-399)||(1145-1202)
[»] scaffold0275 (1 HSPs)
scaffold0275 (342-399)||(2773-2830)
[»] chr5 (4 HSPs)
chr5 (338-399)||(35135729-35135790)
chr5 (321-385)||(39128595-39128659)
chr5 (362-399)||(33459026-33459063)
chr5 (323-379)||(8158353-8158409)
[»] chr2 (5 HSPs)
chr2 (319-384)||(18962086-18962151)
chr2 (339-381)||(37292415-37292457)
chr2 (340-385)||(17952770-17952815)
chr2 (319-399)||(10143114-10143194)
chr2 (337-385)||(31461394-31461442)
[»] chr1 (6 HSPs)
chr1 (318-399)||(48830123-48830204)
chr1 (338-401)||(49517010-49517073)
chr1 (338-399)||(15360836-15360897)
chr1 (338-395)||(29007783-29007840)
chr1 (340-384)||(28467376-28467420)
chr1 (338-394)||(44936657-44936713)
[»] chr8 (1 HSPs)
chr8 (280-399)||(28769348-28769467)


Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 47427833 - 47427447
Alignment:
16 atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47427833 atcaagtaagcctctgcagaaactttccaaatatttgaacaaagaagattatgtaatataaccagtattcaatttggatgtcaatccatcctattgaaaa 47427734  T
116 ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47427733 ttcattctaacaaagtttttggctaatttccagttacatgttttgtaactggaatcggtttaaggtttgtttggattaatttatttgaacttagctatag 47427634  T
216 aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47427633 aagtaaacacatgtgagttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttct 47427534  T
316 aaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacacatgaatgcttttatg 415  Q
    |||||||||                    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
47427533 aaaatagct--------------------tatatgagaatacttttactttattttgtcttttgttataggattaacttatacacatgaatgcttttatg 47427454  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 5006558 - 5006637
Alignment:
320 tagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    |||||||| |||| ||| |||| ||||||||| || | ||| |||||||||| |||||||||||||||||  ||||||||    
5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttataca 5006637  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 383
Target Start/End: Original strand, 44151476 - 44151592
Alignment:
267 tttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttacttt 366  Q
    |||||||||| | |||||||||||| || |||||||||| ||  |||  || |||| |||| |||| ||  |||||||||||||  || | |||||||||    
44151476 tttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttacttt 44151575  T
367 attttgtcttttgttat 383  Q
    ||| | |||||||||||    
44151576 attctatcttttgttat 44151592  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 1403018 - 1402952
Alignment:
319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    ||||||||| |||| ||| |||||||||||||| |||| ||| |||||||||| |||||||||||||    
1403018 atagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatag 1402952  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 49219206 - 49219082
Alignment:
274 catctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgt 373  Q
    ||||| |||||| ||||| || |||||||||| ||  | | ||| |||| |||| |||| ||  |||||||||||||| |||| ||| |||||||||| |    
49219206 catctccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat 49219107  T
374 cttttgttataggaatcacttatac 398  Q
     ||||||||||| ||| ||||||||    
49219106 attttgttatagaaataacttatac 49219082  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 30024703 - 30024645
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttat 396  Q
    |||||||||||||| || | |||||||||||||| ||||||||||||| ||| ||||||    
30024703 tatagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttat 30024645  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 4071885 - 4071838
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||||    
4071885 tatagcttatatgaaaataatttgactttattttatcttttgttatag 4071838  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 45128363 - 45128424
Alignment:
324 ttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||| |||| ||| ||||||||||||||||||| ||| | || ||||| |||||||||||||    
45128363 ttatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatag 45128424  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 37689429 - 37689497
Alignment:
316 aaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    |||||||||||| |||||| | |||||||||||||| |||| ||| |||||| ||| ||||||||||||    
37689429 aaaatagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttatcttttgttata 37689497  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 1395673 - 1395613
Alignment:
339 atagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    ||||||||||||| |||| ||| |||||||||| ||||||||||||| |||  ||||||||    
1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttataca 1395613  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 36646344 - 36646496
Alignment:
233 ttgtgagactatttggcaaaatttacggaaaccgtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaa 332  Q
    |||| ||||||||||| | |  ||| |||||||  ||||| ||| | |||||| ||||| ||||||||||| | ||| | ||||  ||||||||| ||||    
36646344 ttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa 36646443  T
333 taatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
     ||  |||| ||||||||| || | || ||||||||||| |||||||| ||||    
36646444 caagttataacttatatgaaaacaattatactttattttatcttttgtcatag 36646496  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 24235731 - 24235813
Alignment:
319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacaca 401  Q
    ||||||||| |||| ||  ||||||||||||   |||| ||| ||||||| || ||||||||||||| ||| |||||||||||    
24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttatacaca 24235813  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 29771812 - 29771750
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacac 400  Q
    ||||| |||||||| |||| ||| |||||| ||||||||||| ||||| ||| ||||||||||    
29771812 tatagtttatatgaaaataatttcactttactttgtcttttggtatagaaataacttatacac 29771750  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 40122748 - 40122864
Alignment:
266 gtttatgacatctacataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactt 365  Q
    |||||||||||||  ||||| |||||  | ||||||||||  || ||| ||  |||||||||||||| ||  |||||||| ||||| || | ||| ||||    
40122748 gtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtttgactt 40122846  T
366 tattttgtcttttgttat 383  Q
    |||||| |||||||||||    
40122847 tattttatcttttgttat 40122864  T

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Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 1145 - 1202
Alignment:
342 gcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||| |||  ||||||||    
1145 gcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttataca 1202  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 2830 - 2773
Alignment:
342 gcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||| |||  ||||||||    
2830 gcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttataca 2773  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 35135729 - 35135790
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||||| |||  ||||||||    
35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttataca 35135790  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 39128659 - 39128595
Alignment:
321 agcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||||| | ||||| |||| |||||| | ||| |||||||||| |||||||||||||    
39128659 agcttataaaaatagtttatagtttatttgagaacaatttgactttattttatcttttgttatag 39128595  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 33459026 - 33459063
Alignment:
362 actttattttgtcttttgttataggaatcacttataca 399  Q
    |||||||||||||||||||||||| ||| |||||||||    
33459026 actttattttgtcttttgttatagaaataacttataca 33459063  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 8158353 - 8158409
Alignment:
323 cttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg 379  Q
    ||||| |||||||| || ||||||||||| |||| ||| |||||||||| |||||||    
8158353 cttatgaaaataatttaaagcttatatgaaaataatttaactttattttatcttttg 8158409  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 18962086 - 18962151
Alignment:
319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    ||||||||| |||||| | |||||||||||||| || | ||| |||||||||| ||||||||||||    
18962086 atagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttata 18962151  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 37292415 - 37292457
Alignment:
339 atagcttatatgagaatacttttactttattttgtcttttgtt 381  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
37292415 atagcttatatgaaaatagttttactttattttatcttttgtt 37292457  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 17952770 - 17952815
Alignment:
340 tagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||||| |||| ||| |||||||||| |||||||||||||    
17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatag 17952815  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 10143194 - 10143114
Alignment:
319 atagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    ||||||||| |||| ||  |||||||||||| | || | ||| |||| ||||| ||||||||||||| ||| |||||||||    
10143194 atagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttataca 10143114  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 31461442 - 31461394
Alignment:
337 ctatagcttatatgagaatacttttactttattttgtcttttgttatag 385  Q
    |||||||||| | ||||||| ||| |||||||||| |||||||||||||    
31461442 ctatagcttacaggagaataatttgactttattttatcttttgttatag 31461394  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 48830123 - 48830204
Alignment:
318 aatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    |||||||||| |||| | | |||||||||||||| |||| ||| |||||||||| ||||| || |||| ||| |||||||||    
48830123 aatagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttataca 48830204  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 49517073 - 49517010
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttatacaca 401  Q
    ||||||||| |||| || | ||| |||||||||| ||||||||||||| ||| |||||||||||    
49517073 tatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttatacaca 49517010  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 15360897 - 15360836
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcacttataca 399  Q
    |||||||||||||| || | ||| |||||||||| ||||||||||||| ||| ||| |||||    
15360897 tatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataactaataca 15360836  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 29007783 - 29007840
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcactta 395  Q
    |||||||||||||| |||| ||| |||||| ||| ||||||||||||| ||| |||||    
29007783 tatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataactta 29007840  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 28467376 - 28467420
Alignment:
340 tagcttatatgagaatacttttactttattttgtcttttgttata 384  Q
    |||||||||||| |||| ||| |||||||||| ||||||||||||    
28467376 tagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 44936657 - 44936713
Alignment:
338 tatagcttatatgagaatacttttactttattttgtcttttgttataggaatcactt 394  Q
    |||||||||||||| |||| ||| ||||||| || ||||||||||||| ||| ||||    
44936657 tatagcttatatgaaaatagtttgactttatcttatcttttgttatagaaataactt 44936713  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 28769348 - 28769467
Alignment:
280 cataagatgtttccatcttatttccacaaattttctaaaatagcttataaaaataatctatagcttatatgagaatacttttactttattttgtcttttg 379  Q
    |||||| ||||| || |||||||||| ||| | || |||||||||||| |||| |   ||||||||||| || |||| ||| |||| ||||| |  ||||    
28769348 cataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttatagtttg 28769447  T
380 ttataggaatcacttataca 399  Q
    ||||||||||  ||||||||    
28769448 ttataggaatagcttataca 28769467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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