View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18687_high_2 (Length: 595)
Name: NF18687_high_2
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 3 - 580
Target Start/End: Complemental strand, 25897014 - 25896433
Alignment:
| Q |
3 |
tatacttttgcactagaacgagccacaacagattgttttctggaccaccaggatataagatttggaccaaaaaacaaagcagctccagaggtggaacgac |
102 |
Q |
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| T |
25897014 |
tatacttttgcactagaacgagccacaacagattgttttctggaccaccaggatataagatttgaaccaaaaaacaaagcagctccagaggaggaacgac |
25896915 |
T |
|
| Q |
103 |
ggtcatctgggtcagcaacctagtcagcgtcacaatatccattgagagaaaagggttgctgagcagaagcagctagatagtgtaaaatacgtttaactgc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25896914 |
ggtcatctgggtcagcaacctagtcagcgtcacaatatccattgagagaaaagggttgctgagcagaagcagctagatagtgtaaaatacgtttaactgc |
25896815 |
T |
|
| Q |
203 |
ctgccagtgagcttccaaagggtgagccatgatctgaaacactttgttgaatgagtaactaagctcaggtctagtaataattgcatattgcaaggcacca |
302 |
Q |
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| T |
25896814 |
ctgccagtgagcttccaaagggtgagccatgatctgacacactttgttgaatgagtaactaagctcaggtctagtaataattgcatattgcaaggcacca |
25896715 |
T |
|
| Q |
303 |
accacataacgatataaggaagaatctgaaaaagaagcagaaccagttttgctaagtttggcactaaacaccatgggggtagtaacaccactggcttctt |
402 |
Q |
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| T |
25896714 |
accacataacgatataaggaagcatctgaaaaagaagcagaaccggttttgctaagtttggcactaaagaccatgggggtagtaacaccactggcttctt |
25896615 |
T |
|
| Q |
403 |
gcatgttggtacgaaggagaaggacacaaa-atatttggtttgagacagaataagagtaccatcaggttgaagtttcacctctgtgcccagaaagtagtc |
501 |
Q |
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| T |
25896614 |
gcatgttggtacgaaggagaaggtcacaaatatatttggtttgagacagaataagagtaccatcaggttgaggtttcacctctatgcccagaaagtagtc |
25896515 |
T |
|
| Q |
502 |
aaggttgccaagctgcttgagagcaaaaacttgattcactttggaagtaagac--tgaagga-gggaaggagagcttccggt |
580 |
Q |
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| T |
25896514 |
aaggttgccaagctgcttgagagcaaaaacttgattcactttggaagtaagactgtgaagtaggggaaggagagcttccggt |
25896433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 6869548 - 6869604
Alignment:
| Q |
35 |
ttgttttctggaccaccaggatataagatttggaccaaaaaacaaagcagctccaga |
91 |
Q |
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||||||||| |||||| |||| ||||||||||||||||| || | |||||| ||||| |
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| T |
6869548 |
ttgttttctagaccacaaggagataagatttggaccaaagaaaatagcagcaccaga |
6869604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 39582614 - 39582558
Alignment:
| Q |
35 |
ttgttttctggaccaccaggatataagatttggaccaaaaaacaaagcagctccaga |
91 |
Q |
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||||||||| |||||| |||| ||||||||||||||||| || | |||||| ||||| |
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| T |
39582614 |
ttgttttctagaccacaaggagataagatttggaccaaagaaaatagcagcaccaga |
39582558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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