View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18687_high_8 (Length: 276)

Name: NF18687_high_8
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18687_high_8
NF18687_high_8
[»] chr1 (20 HSPs)
chr1 (15-260)||(33504109-33504352)
chr1 (1-43)||(13262852-13262894)
chr1 (192-260)||(22420190-22420258)
chr1 (1-52)||(32038496-32038547)
chr1 (1-51)||(4135527-4135577)
chr1 (1-35)||(28181552-28181586)
chr1 (1-47)||(49680830-49680876)
chr1 (5-47)||(49681660-49681702)
chr1 (1-37)||(8987809-8987845)
chr1 (1-56)||(34309208-34309263)
chr1 (1-35)||(7406264-7406298)
chr1 (1-55)||(8988527-8988581)
chr1 (1-35)||(30663975-30664009)
chr1 (1-43)||(30932786-30932828)
chr1 (1-35)||(46812186-46812220)
chr1 (1-37)||(169624-169660)
chr1 (1-33)||(4433848-4433880)
chr1 (1-33)||(4439207-4439239)
chr1 (1-57)||(23026602-23026658)
chr1 (1-33)||(47968641-47968673)
[»] chr5 (10 HSPs)
chr5 (1-260)||(4084899-4085156)
chr5 (1-43)||(6476781-6476823)
chr5 (1-43)||(10554566-10554608)
chr5 (1-35)||(17071243-17071277)
chr5 (1-35)||(34600280-34600314)
chr5 (1-37)||(1554079-1554115)
chr5 (1-35)||(235611-235645)
chr5 (1-34)||(29046048-29046081)
chr5 (2-35)||(33471087-33471120)
chr5 (1-37)||(27364483-27364519)
[»] chr8 (12 HSPs)
chr8 (1-260)||(3417377-3417634)
chr8 (105-241)||(39205630-39205755)
chr8 (1-94)||(39205495-39205586)
chr8 (1-47)||(38576288-38576334)
chr8 (1-35)||(31602036-31602070)
chr8 (3-35)||(31642085-31642117)
chr8 (2-45)||(37025026-37025069)
chr8 (1-35)||(11686962-11686996)
chr8 (1-47)||(41974660-41974706)
chr8 (1-29)||(9197115-9197143)
chr8 (1-29)||(17725658-17725686)
chr8 (1-37)||(27441486-27441522)
[»] chr2 (20 HSPs)
chr2 (1-135)||(29559320-29559452)
chr2 (1-44)||(1296399-1296442)
chr2 (1-44)||(9276319-9276362)
chr2 (1-52)||(15774222-15774273)
chr2 (1-44)||(38361087-38361130)
chr2 (1-47)||(1297109-1297155)
chr2 (1-47)||(9275606-9275652)
chr2 (1-35)||(18174668-18174702)
chr2 (1-43)||(24933856-24933898)
chr2 (1-43)||(29719466-29719508)
chr2 (2-42)||(6584218-6584258)
chr2 (1-37)||(9540351-9540387)
chr2 (1-37)||(22301866-22301902)
chr2 (1-44)||(24934586-24934629)
chr2 (1-35)||(8542546-8542580)
chr2 (1-35)||(11750277-11750311)
chr2 (1-35)||(22560566-22560600)
chr2 (1-37)||(11007251-11007287)
chr2 (1-37)||(26752719-26752755)
chr2 (1-33)||(29512391-29512423)
[»] chr6 (12 HSPs)
chr6 (30-178)||(12345885-12346031)
chr6 (1-56)||(19323744-19323799)
chr6 (1-47)||(19323002-19323048)
chr6 (2-42)||(18227751-18227791)
chr6 (5-44)||(9365741-9365780)
chr6 (1-35)||(3623194-3623228)
chr6 (1-35)||(8488488-8488522)
chr6 (1-35)||(10171295-10171329)
chr6 (1-35)||(10171964-10171998)
chr6 (1-35)||(26528842-26528876)
chr6 (1-35)||(26529511-26529545)
chr6 (3-44)||(11434446-11434487)
[»] chr7 (35 HSPs)
chr7 (99-258)||(3163690-3163845)
chr7 (23-258)||(22319973-22320201)
chr7 (1-138)||(16664023-16664158)
chr7 (1-138)||(17638383-17638518)
chr7 (1-47)||(25342516-25342562)
chr7 (1-47)||(25343322-25343368)
chr7 (1-40)||(3027993-3028032)
chr7 (1-44)||(25343229-25343272)
chr7 (1-43)||(7668501-7668543)
chr7 (1-35)||(21496982-21497016)
chr7 (1-35)||(27948465-27948499)
chr7 (1-47)||(30660612-30660658)
chr7 (1-47)||(37950454-37950500)
chr7 (1-38)||(46428206-46428243)
chr7 (1-37)||(1417627-1417663)
chr7 (1-57)||(24389593-24389649)
chr7 (1-37)||(38225972-38226008)
chr7 (1-40)||(3029192-3029231)
chr7 (1-44)||(3772516-3772559)
chr7 (1-44)||(18977759-18977802)
chr7 (1-56)||(26636122-26636177)
chr7 (1-56)||(30661433-30661488)
chr7 (1-56)||(37949624-37949679)
chr7 (2-56)||(19067657-19067711)
chr7 (3-37)||(23889867-23889901)
chr7 (3-37)||(23902062-23902096)
chr7 (1-35)||(26636859-26636893)
chr7 (1-35)||(40273579-40273613)
chr7 (10-56)||(43064363-43064409)
chr7 (5-38)||(5930525-5930558)
chr7 (6-43)||(18977033-18977070)
chr7 (3-47)||(24719356-24719400)
chr7 (1-33)||(25599041-25599073)
chr7 (1-37)||(36379697-36379733)
chr7 (1-37)||(46428814-46428850)
[»] chr4 (24 HSPs)
chr4 (1-125)||(7842440-7842562)
chr4 (1-47)||(7841811-7841857)
chr4 (4-44)||(16902903-16902943)
chr4 (3-43)||(24374811-24374851)
chr4 (1-35)||(11938731-11938765)
chr4 (1-35)||(26147031-26147065)
chr4 (1-38)||(1866363-1866400)
chr4 (1-38)||(47785795-47785832)
chr4 (1-41)||(142517-142557)
chr4 (1-56)||(5046004-5046059)
chr4 (1-36)||(9365189-9365224)
chr4 (1-35)||(16903642-16903676)
chr4 (1-43)||(19080405-19080447)
chr4 (1-35)||(20774179-20774213)
chr4 (1-35)||(30573708-30573742)
chr4 (1-35)||(47688478-47688512)
chr4 (1-47)||(53732455-53732501)
chr4 (1-43)||(53733722-53733764)
chr4 (1-35)||(56262498-56262532)
chr4 (1-38)||(40347574-40347611)
chr4 (1-33)||(599302-599334)
chr4 (3-47)||(8248507-8248551)
chr4 (3-47)||(8266172-8266216)
chr4 (1-29)||(44469512-44469540)
[»] scaffold0085 (2 HSPs)
scaffold0085 (1-44)||(15848-15891)
scaffold0085 (1-35)||(21501-21535)
[»] chr3 (24 HSPs)
chr3 (1-51)||(23706786-23706836)
chr3 (1-51)||(23725242-23725292)
chr3 (1-51)||(23743698-23743748)
chr3 (1-47)||(37520548-37520594)
chr3 (1-35)||(981687-981721)
chr3 (1-35)||(13477777-13477811)
chr3 (2-44)||(31974672-31974714)
chr3 (1-47)||(46150716-46150762)
chr3 (1-35)||(48506457-48506491)
chr3 (1-35)||(48764497-48764531)
chr3 (2-51)||(23773243-23773292)
chr3 (2-47)||(45081390-45081435)
chr3 (1-37)||(37988215-37988251)
chr3 (1-32)||(14871173-14871204)
chr3 (1-44)||(44699881-44699924)
chr3 (12-47)||(45393957-45393992)
chr3 (1-44)||(52266443-52266486)
chr3 (1-35)||(29856682-29856716)
chr3 (1-35)||(41458053-41458087)
chr3 (1-35)||(48507031-48507065)
chr3 (1-33)||(265099-265131)
chr3 (1-29)||(20213000-20213028)
chr3 (15-47)||(23772607-23772639)
chr3 (1-29)||(27082796-27082824)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-42)||(26611-26652)
[»] scaffold1207 (1 HSPs)
scaffold1207 (1-40)||(1606-1645)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-35)||(428900-428930)
[»] scaffold0093 (1 HSPs)
scaffold0093 (3-35)||(23727-23759)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 33504109 - 33504352
Alignment:
Q  15 cgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacacacagtattattgta 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33504109 cgttgacaccaaatctcaaccatccattttattcaatcaaag--gtctataatcgtttgttcatcgaataaacttaaattgaacacacagtattattgta 33504206  T
Q  115 ctctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaagatatttcttatttat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33504207 ctctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaagatatttcctatttat 33504306  T
Q  215 gtcaaatttattaaattgatcgcaataggagtatggtagtgaattt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33504307 gtcaaatttattaaattgatcgcaataggagtatggtagtgaattt 33504352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13262852 - 13262894
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  13262852 ggtgtcaacgaattcgttgacaccaaatctcaaccctccattt 13262894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 22420258 - 22420190
Alignment:
Q  192 tcatgaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt 260  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| |||| |||||| | | ||||||||    
T  22420258 tcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattggagtaagtttgtgaattt 22420190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32038496 - 32038547
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaatt 52  Q
    ||||||||||||||||||||||||||||||||||| || | |||||| ||||    
T  32038496 ggtgtcaacgaattcgttgacaccaaatctcaaccgtctaatttatttaatt 32038547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4135577 - 4135527
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaat 51  Q
    |||||||||  ||||||||||||||||||| ||||||| ||||||||||||    
T  4135577 ggtgtcaacatattcgttgacaccaaatcttaaccatcaattttattcaat 4135527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28181552 - 28181586
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28181552 ggtgtcaacgaattcgttgacaccaaatctcaacc 28181586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49680830 - 49680876
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  49680830 ggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 49680876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 49681702 - 49681660
Alignment:
Q  5 tcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  49681702 tcaacgaatccgttgacaccaaatctcaaccatcgattttatt 49681660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8987809 - 8987845
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8987809 ggtgtcaacggattcgttgacaccaaatctcaaccat 8987845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34309263 - 34309208
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||| ||| ||||    
T  34309263 ggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaag 34309208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7406264 - 7406298
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  7406264 ggtgttaacgaattcgttgacaccaaatctcaacc 7406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8988581 - 8988527
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaa 55  Q
    |||||||||| |||| ||||||||||||||||||| | |||| |||| |||||||    
T  8988581 ggtgtcaacggattccttgacaccaaatctcaaccgtacattatatttaattaaa 8988527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30664009 - 30663975
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  30664009 ggtgtcaacggattcgttgacaccaaatctcaacc 30663975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30932828 - 30932786
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| |||||||| ||||||||||||||||| |||||    
T  30932828 ggtgtcaacggattcgttggcaccaaatctcaaccattcattt 30932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46812220 - 46812186
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  46812220 ggtgtcaacggattcgttgacaccaaatctcaacc 46812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 169660 - 169624
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  169660 ggtgtcaacgaatttattgacaccaaatctcaaccat 169624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4433880 - 4433848
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  4433880 ggtgtcaacggattcgttgacaccaaatctcaa 4433848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4439239 - 4439207
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  4439239 ggtgtcaacggattcgttgacaccaaatctcaa 4439207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23026602 - 23026658
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaaga 57  Q
    |||||||||| ||||||||||| ||||||||||| ||  |||||||| ||| |||||    
T  23026602 ggtgtcaacggattcgttgacatcaaatctcaactatttattttatttaatcaaaga 23026658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47968673 - 47968641
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  47968673 ggtgttaacgaattcgttgacaccaaatctcaa 47968641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4084899 - 4085156
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||||  ||||||| |||||||||| ||    
T  4084899 ggtgtcaacgaattcgttgacaccaaatctcaaccattcattttattcaattaaag--gtctataatcgctggttcaccgaataaaattaaattgaaaac 4084996  T
Q  101 acagtattattgtactctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaaga 200  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||| |||||||  ||||    
T  4084997 acagtattattgtactatttcttttcttctgcaaaatttgacgttcttcctcacaccaacccaacagtatacttgtttcgatcgcagctcctcaccaaga 4085096  T
Q  201 tatttcttatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4085097 tatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaattt 4085156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6476823 - 6476781
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  6476823 ggtgtcaacggattcgttgacaccaaatctcaaccattcattt 6476781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10554566 - 10554608
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  10554566 ggtgtcaacggattcgttgacaccaaatctcaaccattcattt 10554608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17071243 - 17071277
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17071243 ggtgtcaacgaattcgttgacaccaaatctcaacc 17071277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34600280 - 34600314
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34600280 ggtgtcaacgaattcgttgacaccaaatctcaacc 34600314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1554115 - 1554079
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  1554115 ggtgtcaacgaattcgttgacaccaaatcttaaccat 1554079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 235611 - 235645
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  235611 ggtgtcaacggattcgttgacaccaaatctcaacc 235645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29046048 - 29046081
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaac 34  Q
    |||||||||| |||||||||||||||||||||||    
T  29046048 ggtgtcaacggattcgttgacaccaaatctcaac 29046081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 33471120 - 33471087
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    ||||||||||||||||||||| ||||||||||||    
T  33471120 gtgtcaacgaattcgttgacaacaaatctcaacc 33471087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27364519 - 27364483
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||| | ||||||||||||||||||||||||||    
T  27364519 ggtgtcaatggattcgttgacaccaaatctcaaccat 27364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 3417377 - 3417634
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||  ||||||| |||||||||| ||    
T  3417377 ggtgttaacgaattcgttgacaccaaatcttaaccatccattttattcaattaaag--gtctataatcgttggttcaccgaataaaattaaattgaaaac 3417474  T
Q  101 acagtattattgtactctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaaga 200  Q
    | || ||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||||| |||| |||||| ||||||| |||||||  ||||    
T  3417475 aaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcgatcgcagctcctcaccaaga 3417574  T
Q  201 tatttcttatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3417575 tatttcttatttatgtcaaatttattaaattgatcgcaataggagtataatagtgaattt 3417634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 39205630 - 39205755
Alignment:
Q  105 tattattgtactctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaagatatt 204  Q
    ||||||||||||||||||||||||||  ||||||||||     |||||||||||||||||||||| ||||||||||||  ||| |||||||||||||||     
T  39205630 tattattgtactctttcttttcttctctaaaatttgacg----tcctcacaccaacccaacaataaacttgtttggat-acaattcctcatgaagatat- 39205723  T
Q  205 tcttatttatgtcaaatttattaaattgatcgcaata 241  Q
         |||||||||||||||||||| |||| ||||||    
T  39205724 -----tttatgtcaaatttattaaagtgattgcaata 39205755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39205495 - 39205586
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaatt 94  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||  ||||||||||||| |||||||  |||||||||||||||    
T  39205495 ggtgtcaacgaatccgttgacatcaaatctcaaccatctattttatttaatcaa--aggtctataatcgcttgttcaccgaataaacttaaatt 39205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38576334 - 38576288
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38576334 ggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 38576288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31602036 - 31602070
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31602036 ggtgtcaacgaattcgttgacaccaaatctcaacc 31602070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 31642117 - 31642085
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||    
T  31642117 tgtcaacgaattcgttgacaccaaatctcaacc 31642085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 37025026 - 37025069
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccatttta 45  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||    
T  37025026 gtgtcaacagattcgttgacaccaaatctcaaccatcgatttta 37025069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11686996 - 11686962
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11686996 ggtgtcaacgaattcgttgacactaaatctcaacc 11686962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41974660 - 41974706
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||| |||| |||| ||||    
T  41974660 ggtgtcaacggattcgttgacaccaaatctcagccattcattatatt 41974706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9197115 - 9197143
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatc 29  Q
    |||||||||||||||||||||||||||||    
T  9197115 ggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17725686 - 17725658
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatc 29  Q
    |||||||||||||||||||||||||||||    
T  17725686 ggtgtcaacgaattcgttgacaccaaatc 17725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27441486 - 27441522
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  27441486 ggtgtcaacgaattcgttgacatcaaatcttaaccat 27441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 29559452 - 29559320
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||| ||||||||||||||| |||||||||||||||||| ||    
T  29559452 ggtgtcaacgaattcgttgacaccaaatctcaatcatccattttattcaatcaaag--gtctgtaatcgtttgttcatggaataaacttaaattgaaaac 29559355  T
Q  101 acagtattattgtactctttcttttcttctgcaaa 135  Q
    ||| |||||||| ||||||||||||||||||||||    
T  29559354 acattattattgcactctttcttttcttctgcaaa 29559320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1296399 - 1296442
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1296399 ggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 1296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9276362 - 9276319
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  9276362 ggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 9276319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15774222 - 15774273
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaatt 52  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  15774222 ggtgtcaacgaatttgttgacaccaaatctcaaccatcaattttatttaatt 15774273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38361087 - 38361130
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  38361087 ggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 38361130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1297155 - 1297109
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1297155 ggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 1297109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9275606 - 9275652
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  9275606 ggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 9275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18174702 - 18174668
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18174702 ggtgtcaacgaattcgttgacaccaaatctcaacc 18174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24933856 - 24933898
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  24933856 ggtgtcaacgaattcattgacaccaaatctcaaccattcattt 24933898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29719466 - 29719508
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  29719466 ggtgtcaacggattcgttgacaccaaatctcaaccctccattt 29719508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 6584258 - 6584218
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccatt 42  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  6584258 gtgtcaacggattcgttgacaccaaatcacaaccatccatt 6584218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9540351 - 9540387
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9540351 ggtgtcaacgaattcgttgacaccaaatcttaaccat 9540387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22301902 - 22301866
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22301902 ggtgtcaacgaattcgttgacaccaaatcttaaccat 22301866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24934629 - 24934586
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||    
T  24934629 ggtgtcaacggattcgttaacaccaaatctcaaccatcaatttt 24934586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8542580 - 8542546
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  8542580 ggtgtcaacggattcgttgacaccaaatctcaacc 8542546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11750277 - 11750311
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  11750277 ggtgtcaacggattcgttgacaccaaatctcaacc 11750311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22560600 - 22560566
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  22560600 ggtgtcaacggattcgttgacaccaaatctcaacc 22560566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11007251 - 11007287
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  11007251 ggtgtcaacggattcgttgacactaaatctcaaccat 11007287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26752755 - 26752719
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  26752755 ggtgtcaacgaattcgttgacatcaaatcttaaccat 26752719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29512391 - 29512423
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||||||| ||||||||||||||||||    
T  29512391 ggtgtcaacgaatttgttgacaccaaatctcaa 29512423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 12346031 - 12345885
Alignment:
Q  30 tcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacacacagtattattgtactctttcttttcttc 129  Q
    ||||||||| |||||||||||| ||||  |||||||||||||  ||||  ||||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  12346031 tcaaccatctattttattcaatcaaag--gtctataatcgttgattcaccgaataaaattaaattgaaaacacagtattattgtactatttcttttcttc 12345934  T
Q  130 tgcaaaatttgacactcttcctcacaccaacccaacaatatacttgttt 178  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||    
T  12345933 tgcaaaatttgacgttcttcctcacaccaacccaacagtatacttgttt 12345885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19323799 - 19323744
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  19323799 ggtgtcaacgaattcgttgacaccaaatctcaaccatcgattttatttgattaaag 19323744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19323002 - 19323048
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  19323002 ggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 19323048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18227751 - 18227791
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccatt 42  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  18227751 gtgtcaacggattcgttgacaccaaatcacaaccatccatt 18227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 9365741 - 9365780
Alignment:
Q  5 tcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  9365741 tcaacggattcgttgacaccaaatctcaaccatcaatttt 9365780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3623194 - 3623228
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  3623194 ggtgtcaacgaattctttgacaccaaatctcaacc 3623228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8488488 - 8488522
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  8488488 ggtgtcaacggattcgttgacaccaaatctcaacc 8488522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10171295 - 10171329
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  10171295 ggtgtcaacggattcgttgacaccaaatctcaacc 10171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10171998 - 10171964
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  10171998 ggtgtcaacgcattcgttgacaccaaatctcaacc 10171964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26528842 - 26528876
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  26528842 ggtgtcaacgcattcgttgacaccaaatctcaacc 26528876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26529545 - 26529511
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  26529545 ggtgtcaacggattcgttgacaccaaatctcaacc 26529511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 11434487 - 11434446
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||| |||||||||||||||||||||||| || |||||    
T  11434487 tgtcaacggattcgttgacaccaaatctcaaccttctatttt 11434446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 3163690 - 3163845
Alignment:
Q  99 acacagtattattgtactctttcttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaa 198  Q
    ||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||  |||||||||| ||||   ||||| ||    
T  3163690 acacagtattattgtactctttctttt-ttatgcaaaatttgtcactcttcctcaaaccaatccaacaatattgttgtttggattgcaa---ctcatcaa 3163785  T
Q  199 gatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaat 258  Q
     ||||||| ||||||||||||||||||| |||| ||| |||| |||||||| ||||||||    
T  3163786 tatatttcctatttatgtcaaatttattcaatttatcacaattggagtatgatagtgaat 3163845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 22319973 - 22320201
Alignment:
Q  23 ccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacacacagtattattgtactctttct 122  Q
    ||||||||| |||||||||| ||||| || ||||  | |||||||||||||||||   ||||||||||||||||| |||||||| ||||||||||||| |    
T  22319973 ccaaatctcgaccatccattgtattcgatcaaag--gcctataatcgtttgttcaccaaataaacttaaattgaaaacacagtaatattgtactcttttt 22320070  T
Q  123 tttctt----ctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaagatatttcttatttatgtca 218  Q
    ||| ||     |||||| |||| |||||||||||| ||||| ||||||||||     |||  || ||||||| ||   |||||||||| |||||||||||    
T  22320071 tttttttttaatgcaaattttgtcactcttcctcaaaccaatccaacaatat-----ttttaat-gcaactcgtc---aagatatttcctatttatgtca 22320161  T
Q  219 aatttattaaattgatcgcaataggagtatggtagtgaat 258  Q
    |||||||| |||| |||||||| |||||||||||||||||    
T  22320162 aatttattcaatttatcgcaattggagtatggtagtgaat 22320201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 16664158 - 16664023
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    |||||||||| || ||||||||| |||||||||||||| ||| || | |||  ||  |  ||||||| |||||||||   ||||||||||||||||| ||    
T  16664158 ggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatgg--ctataattgtttgttcaccaaataaacttaaattgaaaac 16664061  T
Q  101 acagtattattgtactctttcttttcttctgcaaaatt 138  Q
    | ||||||||||||||||||||||||||||||||||||    
T  16664060 atagtattattgtactctttcttttcttctgcaaaatt 16664023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 17638518 - 17638383
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    |||||||||| || ||||||||| |||||||||||||| ||| || | |||  ||  |  ||||||| |||||||||   ||||||||||||||||| ||    
T  17638518 ggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatgg--ctataattgtttgttcaccaaataaacttaaattgaaaac 17638421  T
Q  101 acagtattattgtactctttcttttcttctgcaaaatt 138  Q
    | ||||||||||||||||||||||||||||||||||||    
T  17638420 atagtattattgtactctttcttttcttctgcaaaatt 17638383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25342516 - 25342562
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25342516 ggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25342562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25343322 - 25343368
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25343322 ggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25343368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3027993 - 3028032
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatcca 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  3027993 ggtgtcaacgaattcgttgacaccaaatctcaaccgtcca 3028032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25343272 - 25343229
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  25343272 ggtgtcaatgaattcgttgacaccaaatctcaaccatcaatttt 25343229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7668501 - 7668543
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  7668501 ggtgtcaacggattcgttgacaccaaatctcaaccattcattt 7668543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21497016 - 21496982
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21497016 ggtgtcaacgaattcgttgacaccaaatctcaacc 21496982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27948465 - 27948499
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27948465 ggtgtcaacgaattcgttgacaccaaatctcaacc 27948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30660612 - 30660658
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  30660612 ggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 30660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37950500 - 37950454
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  37950500 ggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 37950454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46428206 - 46428243
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  46428206 ggtgtcaacggattcgttgacaccaaatctcaaccatc 46428243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1417627 - 1417663
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  1417627 ggtgtcaacgaattcgttgacaccaaatcttaaccat 1417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24389649 - 24389593
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaaga 57  Q
    |||||||||| |||| |||||||||||||||||||||  |||||||| ||| |||||    
T  24389649 ggtgtcaacggattcattgacaccaaatctcaaccatttattttatttaatcaaaga 24389593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38226008 - 38225972
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  38226008 ggtgtcaacgaattcgttgacaccaaatcttaaccat 38225972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3029231 - 3029192
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatcca 40  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  3029231 ggtgtcaacgaattcgttgacaccaaatcccaaccgtcca 3029192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3772559 - 3772516
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||| |||||||||||||||||||||||| || |||||    
T  3772559 ggtgtcaacgtattcgttgacaccaaatctcaaccgtctatttt 3772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18977802 - 18977759
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||    
T  18977802 ggtgtcaacggattcgttaacaccaaatctcaaccatcaatttt 18977759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26636122 - 26636177
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||| |||||||||||||||||||||||| | |||| |||| ||| ||||    
T  26636122 ggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaag 26636177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30661488 - 30661433
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||| ||| ||||    
T  30661488 ggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaag 30661433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37949624 - 37949679
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||| ||| ||||    
T  37949624 ggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaag 37949679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 19067657 - 19067711
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    ||||||||| |||||||||||||||||||||||| |  |||||||| ||| ||||    
T  19067657 gtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaag 19067711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 23889867 - 23889901
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||| ||||||||||||||||||||||||||    
T  23889867 tgtcaacggattcgttgacaccaaatctcaaccat 23889901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 23902062 - 23902096
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||| ||||||||||||||||||||||||||    
T  23902062 tgtcaacggattcgttgacaccaaatctcaaccat 23902096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26636893 - 26636859
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  26636893 ggtgtcaacggattcgttgacaccaaatctcaacc 26636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40273579 - 40273613
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  40273579 ggtgtcaatgaattcgttgacaccaaatctcaacc 40273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 43064363 - 43064409
Alignment:
Q  10 gaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    ||||||||||||| |||||||||||| || |||||||||||| ||||    
T  43064363 gaattcgttgacatcaaatctcaaccgtctattttattcaatcaaag 43064409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 5930525 - 5930558
Alignment:
Q  5 tcaacgaattcgttgacaccaaatctcaaccatc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  5930525 tcaacgaattcgttgacaccaaatcttaaccatc 5930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 18977033 - 18977070
Alignment:
Q  6 caacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  18977033 caacggattcgttgacaccaaatctcaaccattcattt 18977070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 24719356 - 24719400
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||| ||||||||||||||||| |||| ||| |||||||||    
T  24719356 tgtcaacggattcgttgacaccaaatatcaatcattcattttatt 24719400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25599041 - 25599073
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  25599041 ggtgtcaacggattcgttgacaccaaatctcaa 25599073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36379697 - 36379733
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  36379697 ggtgtcaacgaatccgttgacaccaaatctcagccat 36379733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46428850 - 46428814
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  46428850 ggtgtcaacgaattcgttgacatcaaatctcatccat 46428814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 7842562 - 7842440
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaagaggtctataatcgtttgttcattgaataaacttaaattgaacac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| |||  |  | | |||||||  ||||| ||  ||||||||||||||||||  |    
T  7842562 ggtgtcaacgaattcgttgacaccaaatctcaaccatctatttcattaaatcca--atggctataattatttgtacaccgaataaacttaaattgaaagc 7842465  T
Q  101 acagtattattgtactctttctttt 125  Q
    ||| |||||||||||||||||||||    
T  7842464 acaatattattgtactctttctttt 7842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7841811 - 7841857
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  7841811 ggtgtcaacgaattcgttgacaccaaatctcaactatctattttatt 7841857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 16902903 - 16902943
Alignment:
Q  4 gtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  16902903 gtcaacgaattcgttgacaccaaatctcaaccatcaatttt 16902943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 24374811 - 24374851
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  24374811 tgtcaacgaattcgttgacaccaaatctcaaccttccattt 24374851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11938731 - 11938765
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11938731 ggtgtcaacgaattcgttgacaccaaatctcaacc 11938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26147065 - 26147031
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26147065 ggtgtcaacgaattcgttgacaccaaatctcaacc 26147031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1866363 - 1866400
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatc 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1866363 ggtgtcaatgaattcgttgacaccaaatctcaaccatc 1866400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47785832 - 47785795
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  47785832 ggtgtcaacggattcgttgacaccaaatctcaaccatc 47785795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 142557 - 142517
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccat 41  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  142557 ggtgtcaacgaattcattgacaccaaatcttaaccatccat 142517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5046004 - 5046059
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaattaaag 56  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||| ||| ||||    
T  5046004 ggtgtcaacggattcgttgacaccaaatctcaaccgtttattttatttaatcaaag 5046059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9365189 - 9365224
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacca 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  9365189 ggtgtcaacgaatttgttgacaccaaatctcaacca 9365224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16903676 - 16903642
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  16903676 ggtgtcaacggattcgttgacaccaaatctcaacc 16903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19080405 - 19080447
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  19080405 ggtgtcaacggattcgttgacaccaaatttcaaccattcattt 19080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20774213 - 20774179
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  20774213 ggtgtcaacggattcgttgacaccaaatctcaacc 20774179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30573742 - 30573708
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  30573742 ggtgtcaacggattcgttgacaccaaatctcaacc 30573708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47688512 - 47688478
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  47688512 ggtgtcaacggattcgttgacaccaaatctcaacc 47688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53732455 - 53732501
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| |||||||||||| ||||||||||| || ||||||||    
T  53732455 ggtgtcaacggattcgttgacactaaatctcaaccgtctattttatt 53732501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 53733764 - 53733722
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattt 43  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||    
T  53733764 ggtgtcaacggattcgttgacaccaaatttcaaccatctattt 53733722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 56262498 - 56262532
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  56262498 ggtgtcaatgaattcgttgacaccaaatctcaacc 56262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40347574 - 40347611
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatc 38  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  40347574 ggtgtcaacgaatccgtttacaccaaatctcaaccatc 40347611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 599334 - 599302
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  599334 ggtgtcaacggattcgttgacaccaaatctcaa 599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8248551 - 8248507
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||| ||||||||||||||||||| |||| || ||||||||    
T  8248551 tgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8248507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8266216 - 8266172
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||| ||||||||||||||||||| |||| || ||||||||    
T  8266216 tgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8266172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44469512 - 44469540
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatc 29  Q
    |||||||||||||||||||||||||||||    
T  44469512 ggtgtcaacgaattcgttgacaccaaatc 44469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15891 - 15848
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  15891 ggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 15848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21501 - 21535
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21501 ggtgtcaacgaattcgttgacaccaaatctcaacc 21535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23706836 - 23706786
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaat 51  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  23706836 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23706786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23725292 - 23725242
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaat 51  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  23725292 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23743748 - 23743698
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaat 51  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  23743748 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23743698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37520594 - 37520548
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  37520594 ggtgtcaacgaattcgttgacaccaaatctcaaccatcaatcttatt 37520548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 981687 - 981721
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  981687 ggtgtcaacgaattcgttgacaccaaatctcaacc 981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13477811 - 13477777
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13477811 ggtgtcaacgaattcgttgacaccaaatctcaacc 13477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 31974672 - 31974714
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  31974672 gtgtcaacggattcgttgacaccaaatctcaaccatctatttt 31974714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46150762 - 46150716
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||    
T  46150762 ggtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 46150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48506457 - 48506491
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48506457 ggtgtcaacgaattcgttgacaccaaatctcaacc 48506491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48764497 - 48764531
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48764497 ggtgtcaacgaattcgttgacaccaaatctcaacc 48764531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 23773292 - 23773243
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccattttattcaat 51  Q
    ||||||||  |||||||||||||||||| |||||||| ||||||||||||    
T  23773292 gtgtcaacatattcgttgacaccaaatcacaaccatcaattttattcaat 23773243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 45081435 - 45081390
Alignment:
Q  2 gtgtcaacgaattcgttgacaccaaatctcaaccatccattttatt 47  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  45081435 gtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 45081390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37988251 - 37988215
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccat 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37988251 ggtgtcaacgaattcgttgacaccaaatctcagccat 37988215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14871173 - 14871204
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctca 32  Q
    ||||||||||||||||||||||||||||||||    
T  14871173 ggtgtcaacgaattcgttgacaccaaatctca 14871204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44699881 - 44699924
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    |||||||||| |||||||||||||||||||||||| || |||||    
T  44699881 ggtgtcaacggattcgttgacaccaaatctcaaccgtctatttt 44699924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 45393992 - 45393957
Alignment:
Q  12 attcgttgacaccaaatctcaaccatccattttatt 47  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45393992 attcgttgacaccaaatctcaaccatcaattttatt 45393957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 52266486 - 52266443
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatttt 44  Q
    ||||| ||||||||||||||||||||||||||||| || |||||    
T  52266486 ggtgttaacgaattcgttgacaccaaatctcaaccgtctatttt 52266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29856716 - 29856682
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  29856716 ggtgtcaacggattcgttgacaccaaatctcaacc 29856682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41458053 - 41458087
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  41458053 ggtgtcaacggattcgttgacaccaaatctcaacc 41458087  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48507065 - 48507031
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  48507065 ggtgtcaatgaattcgttgacaccaaatctcaacc 48507031  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 265131 - 265099
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  265131 ggtgtcaacggattcgttgacaccaaatctcaa 265099  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 20213000 - 20213028
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatc 29  Q
    |||||||||||||||||||||||||||||    
T  20213000 ggtgtcaacgaattcgttgacaccaaatc 20213028  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 23772607 - 23772639
Alignment:
Q  15 cgttgacaccaaatctcaaccatccattttatt 47  Q
    |||||||||||||||||||||||| ||||||||    
T  23772607 cgttgacaccaaatctcaaccatctattttatt 23772639  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27082796 - 27082824
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatc 29  Q
    |||||||||||||||||||||||||||||    
T  27082796 ggtgtcaacgaattcgttgacaccaaatc 27082824  T

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Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26611 - 26652
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatccatt 42  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  26611 ggtgtcaacggattcgttgacaccaaatcacaaccatccatt 26652  T

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Target: scaffold1207 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1606 - 1645
Alignment:
Q  1 ggtgtcaacgaattcgttgacaccaaatctcaaccatcca 40  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  1606 ggtgtcaacgaattcgttgacaccaaatcccaaccgtcca 1645  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 428930 - 428900
Alignment:
Q  5 tcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||||||||||||||||||||||||||    
T  428930 tcaacgaattcgttgacaccaaatctcaacc 428900  T

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Target: scaffold0093 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23759 - 23727
Alignment:
Q  3 tgtcaacgaattcgttgacaccaaatctcaacc 35  Q
    |||||||| ||||||||||||||||||||||||    
T  23759 tgtcaacggattcgttgacaccaaatctcaacc 23727  T

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