View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18687_high_9 (Length: 247)
Name: NF18687_high_9
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 32640243 - 32640379
Alignment:
| Q |
92 |
aaattaggtattgtaccatctttgaaaagcttgtcctgggccaatgctgcaatccgttgctttatggcactgttgtcgacagtaagaatcatacgttgat |
191 |
Q |
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| T |
32640243 |
aaattagttattgtaccatctttgaaaagcttgtcctgggccaatgctgcaatccgttgctttatggcactgttgtcgacagtaagaatcatacgttgat |
32640342 |
T |
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| Q |
192 |
ggtccaagaatgcaactcgtggtgacagtgctgaaac |
228 |
Q |
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| T |
32640343 |
ggtccaagaatgcaactcgtggtgacagtgctgaaac |
32640379 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32640129 - 32640222
Alignment:
| Q |
1 |
atcaaattagtctttaacatttaactttctaatattaacagtaatatttttctaattagtgataattagtttataaattaatcaagcttataaa |
94 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640129 |
atcaaattagtctttaacatttacctttctaatattaacagtaatatttttctaattagtgataattagtttataaattaatcaagcttataaa |
32640222 |
T |
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