View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18687_low_11 (Length: 307)
Name: NF18687_low_11
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 10520643 - 10520506
Alignment:
| Q |
15 |
attattcttgttgggttgcgtgattatcaggatgataaggctgatgtgatcttgaagtatatgccggatgaggccagattgttgaaggcttatagcgagc |
114 |
Q |
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| T |
10520643 |
attattcttgttgggttgcgtgattatcaggatgataaggctgatgtgatcttgaagtatatgccggatgaggccagattgttgaaggcgtatagcgagc |
10520544 |
T |
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| Q |
115 |
ttccggatagtgtgaggcttaatgaaggaattggtggt |
152 |
Q |
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| T |
10520543 |
ttccggatagtgtgaggcttaatgaaggaattggtggt |
10520506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 10520436 - 10520356
Alignment:
| Q |
222 |
aagatttgaggggttcgtgnnnnnnngttcaaaagatgggnnnnnnnnataagttttatggtatgatcatgatgatgatgt |
302 |
Q |
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| T |
10520436 |
aagatttgaggggttcgtgtttttttgttcaaaagatgggttttttttataagttttatggtatgatcatgatgatgatgt |
10520356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 241601 - 241720
Alignment:
| Q |
33 |
cgtgattatcaggatgataaggctgatgtgatcttgaagtatatgccggatgaggccagattgttgaaggcttatagcgagcttccggatagtgtgaggc |
132 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |||||||||||| ||| ||||||| | | |||| |
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| T |
241601 |
cgtgattatcaggatgataaggctgatgtgatattgaaatatatgccggatgaggcgaggctattgaaggcttatgatgagattccggaatctattaggc |
241700 |
T |
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| Q |
133 |
ttaatgaaggaattggtggt |
152 |
Q |
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| T |
241701 |
ttaatgaaggtattgctggt |
241720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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