View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18687_low_12 (Length: 278)
Name: NF18687_low_12
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_low_12 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 2361373 - 2361240
Alignment:
| Q |
145 |
aacacctcacttcgcgagtgatggtggtttaaagccccacgtaattgagttggaagaaacttattggtgagaaaaggttcattcacctagccatcaatgc |
244 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361373 |
aacacctcacttggcgagtgatggcggtttaaagccccacgtaattgagttggaagaaacttattggtgagaaaaggttcattcacctagccatcaatgc |
2361274 |
T |
|
| Q |
245 |
atttgtatggagaattttcagtagttgtcttcat |
278 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
2361273 |
atttgtctggagaattttcagtagttgtcttcat |
2361240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 2361578 - 2361466
Alignment:
| Q |
17 |
atttttaacaagttttggtcttctatcttttaaaaatgtgttgttgtagtttgttagtctgaaacataacataagttaacaaaagttgaatacgttgacg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2361578 |
atttttaataagttttggtcttctatcttttaaaaatgtgttgttgtagtttgtgagtctgaaacataacataagttaacaaaagttgaatacgttgacg |
2361479 |
T |
|
| Q |
117 |
gtgttaacatttt |
129 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2361478 |
gtgttaacatttt |
2361466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University